[Nek5000-users] Compilation error

nek5000-users at lists.mcs.anl.gov nek5000-users at lists.mcs.anl.gov
Tue May 24 09:20:19 CDT 2011


Dear Jean-Christophe,

etime is a fairly std. timer function, but obviously not
supported with your compiler.

When using mpi, it uses instead the mpi timer, so there is no
issue.

The quick fix here would be to edit mpi_dummy.f and change
the etime() reference therein to the ibm timer function.

You might also try setting it zero - but I'm not 100% certain
that there are no divisions involving time in the denominator...
It's worth a try, however.

Paul



On Tue, 24 May 2011, nek5000-users at lists.mcs.anl.gov wrote:

> Hi Nek's,
>
> Up to now I have compiled and run the code on the various workstations
> available in my lab. I am now trying to compile it (only in serial for the
> moment) on an IBM Power 6 (
> http://www.idris.fr/su/Scalaire/vargas/hw-vargas.html) but I encounter an
> error (which is the reason why I do not compile it using mpi support
> yet). Following is the outpost from the compilation:
>
> xlf_r -qsuppress=cmpmsg -o nek5000  obj/stenosis.o obj/drive.o obj/drive1.o
> obj/drive2.o obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o
> obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o
> obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o
> obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o
> obj/turb.o obj/mvmesh.o obj/ic.o obj/ssolv.o obj/planx.o obj/math.o
> obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o
> obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o obj/hsmg.o
> obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o obj/navier6.o
> obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o obj/calcz.o obj/byte.o
> obj/chelpers.o obj/byte_mpi.o obj/postpro.o obj/cvode_driver.o
> obj/nek_comm.o obj/init_plugin.o obj/setprop.o obj/qthermal.o
> obj/cvode_aux.o obj/makeq_aux.o obj/papi.o obj/ssygv.o obj/dsygv.o
> obj/mxm_std.o obj/blas.o obj/comm_mpi.o obj/mpi_dummy.o obj/singlmesh.o
> obj/jl2_gs.o obj/jl2_sort.o obj/jl2_sarray_transfer.o obj/jl2_sarray_sort.o
> obj/jl2_gs_local.o obj/jl2_crystal.o obj/jl2_comm.o obj/jl2_tensor.o
> obj/jl2_fail.o obj/jl2_fcrystal.o obj/jl_tuple_list.o obj/jl_transfer.o
> obj/jl_sort.o obj/jl_fcrystal.o obj/jl_errmem.o obj/jl_crystal.o
> obj/jl2_findpts.o obj/jl2_findpts_local.o obj/jl2_obbox.o obj/jl2_poly.o
> obj/jl2_lob_bnd.o obj/jl2_findpts_el_3.o obj/jl2_findpts_el_2.o
> obj/jl2_sparse_cholesky.o obj/jl2_xxt.o obj/jl2_fcrs.o
> ld: 0711-317 ERROR: Undefined symbol: .etime
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
> information.
> gmake: *** [nek5000] Error 8
>
> Attached is the whole compiler.out file also. Does anyone have an idea?
>
> Regards,
>
> -- 
> Jean-Christophe
>



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