[Swift-user] SGE swift job

[Mihael Hategan]

For reference, this is an email that got held by the mailing list
software. The issue has since been resolved.

Mihael

On Fri, 2015-05-01 at 15:27 +0000, Altaweel, Mark wrote:
> Hi,
> 
> I am trying to use Swift (swift-0.96-sge-mod) and trying to run a script on SGE for the local cluster. Is there any clear reason for the error (below).
> 
> My swift.conf setup is:
> 
> site.Legion {
>         execution {
>                 type: "coaster"
>                 jobManager: "local:sge"
>                 URL : "localhost"
>                 options {
>                         maxJobs: 2
>                         nodeGranularity: 1
>                         maxNodesPerJob: 2
>                         tasksPerNode: 1
>                         jobProject: "AllUsers"
>                         jobQueue: "Tarvek"
>                         maxJobTime: "1800"
> 
>                 }
>         }
>         maxParallelTasks : 3
>         initialParallelTasks : 2
>         staging: local
>         workDirectory: "/tmp/"${env.USER}
>         app.ALL {
>                 executable: "*"
>                 maxWallTime: "00:05:00"
>         }
> }
> 
> 
> I get the following error:
> 
> RunID: run009
> Warning: The @ syntax for function invocation is deprecated
> Warning: Variable spans, defined on line 52, might have multiple conflicting writers
> Progress: Fri, 01 May 2015 16:19:29+0100
> Number of parameter combinations: 2
> Stride: 1
> Begin: 1, End: 1
> Begin: 2, End: 2
> Progress: Fri, 01 May 2015 16:19:30+0100  Submitted:2
> Error: No parallel environment specified
> 
> Could not submit job (qsub reported an exit code of 1).
> Unable to run job: job rejected: the requested parallel environment "1way" does not exist.Exiting.
> 
> Execution failed:
> Exception in sh:
>     Arguments: [repast_instance.sh, /imports/home1/tcrnma3/Scratch/UrbanModel/, 1, 1, 1, urf_2.txt]
>     Host: Legion
>     Directory: repast-run009/jobs/9/sh-9xg6568m
> exception @ swift-int-staging.k, line: 174
> Caused by:
> exception @ swift-int-staging.k, line: 170
> Caused by: Block task failed: Error submitting block task
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job (qsub reported an exit code of 1).
> Unable to run job: job rejected: the requested parallel environment "1way" does not exist.Exiting.
> 
> at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:62)
> at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45)
> at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:61)
> at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:70)
> Caused by: org.globus.cog.abstraction.impl.scheduler.common.ProcessException: Could not submit job (qsub reported an exit code of 1).
> Unable to run job: job rejected: the requested parallel environment "1way" does not exist.Exiting.
> 
> at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:116)
> at org.globus.cog.abstraction.impl.scheduler.sge.SGEExecutor.start(SGEExecutor.java:192)
> at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:52)
> ... 3 more
> 
> 
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