[Swift-user] SGE swift job

[Altaweel, Mark]

Hi,

I am trying to use Swift (swift-0.96-sge-mod) and trying to run a script on SGE for the local cluster. Is there any clear reason for the error (below).

My swift.conf setup is:

site.Legion {
        execution {
                type: "coaster"
                jobManager: "local:sge"
                URL : "localhost"
                options {
                        maxJobs: 2
                        nodeGranularity: 1
                        maxNodesPerJob: 2
                        tasksPerNode: 1
                        jobProject: "AllUsers"
                        jobQueue: "Tarvek"
                        maxJobTime: "1800"

                }
        }
        maxParallelTasks : 3
        initialParallelTasks : 2
        staging: local
        workDirectory: "/tmp/"${env.USER}
        app.ALL {
                executable: "*"
                maxWallTime: "00:05:00"
        }
}


I get the following error:

RunID: run009
Warning: The @ syntax for function invocation is deprecated
Warning: Variable spans, defined on line 52, might have multiple conflicting writers
Progress: Fri, 01 May 2015 16:19:29+0100
Number of parameter combinations: 2
Stride: 1
Begin: 1, End: 1
Begin: 2, End: 2
Progress: Fri, 01 May 2015 16:19:30+0100  Submitted:2
Error: No parallel environment specified

Could not submit job (qsub reported an exit code of 1).
Unable to run job: job rejected: the requested parallel environment "1way" does not exist.Exiting.

Execution failed:
Exception in sh:
    Arguments: [repast_instance.sh, /imports/home1/tcrnma3/Scratch/UrbanModel/, 1, 1, 1, urf_2.txt]
    Host: Legion
    Directory: repast-run009/jobs/9/sh-9xg6568m
exception @ swift-int-staging.k, line: 174
Caused by:
exception @ swift-int-staging.k, line: 170
Caused by: Block task failed: Error submitting block task
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could not submit job (qsub reported an exit code of 1).
Unable to run job: job rejected: the requested parallel environment "1way" does not exist.Exiting.

at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:62)
at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45)
at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:61)
at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:70)
Caused by: org.globus.cog.abstraction.impl.scheduler.common.ProcessException: Could not submit job (qsub reported an exit code of 1).
Unable to run job: job rejected: the requested parallel environment "1way" does not exist.Exiting.

at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:116)
at org.globus.cog.abstraction.impl.scheduler.sge.SGEExecutor.start(SGEExecutor.java:192)
at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:52)
... 3 more


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