[Swift-user] trunk-cobalt block task ended prematurely

[Mihael Hategan]

I looked at the Cobalt script in the run directory you sent and it was
empty. When I look at the trunk code for the Cobalt provider, I don't
see anything that would generate a script, so I'm not sure what's
happening there. I vaguely remember that somebody wrote a patch for the
Cobalt provider to use script mode, but I'm not sure where that ended
up.

Mihael

On Mon, 2015-03-02 at 16:14 -0600, Ketan Maheshwari wrote:
> This is the first time I am trying with 0.96.
> 
> The generated qsub command indeed does not have "--mode script" which seems
> to be causing the issue.
> 
> Thanks,
> Ketan
> 
> On Mon, Mar 2, 2015 at 4:02 PM, Michael Wilde <wilde at anl.gov> wrote:
> 
> >  Is this the first time you've tried running 0.96 on the BG/Q in subjob
> > mode?
> > (I.e., has this ever worked before?)
> >
> > Did you get a submission script in the run directory (or a log of the
> > cobalt qsub or cqsub command) which you could test manually?
> >
> > If 0.96 is rejecting the "script" property, it seems possible that 0.96 is
> > generating an invalid qsub command and/or submission script.
> >
> > - Mike
> >
> >
> >
> > On 3/2/15 3:47 PM, Ketan Maheshwari wrote:
> >
> > I trying to run on BG/Q with local:cobalt with trunk but Swift crashes
> > with the following error:
> >
> >  Caused by: Exception in bgsh:
> >     Arguments: [/home/ketan/SwiftApps/subjobs/mpicatsnsleep/mpicatnap,
> > /gpfs/mira-home/ketan/SwiftApps/subjobs/mpicatsnsleep/./data.txt,
> > /gpfs/mira-home/ketan/SwiftApps/subjobs/mpicatsnsleep/./outdir/f.0002.out,
> > 1]
> >     Host: cluster
> >     Directory: catsnsleepmpi-run001/jobs/b/bgsh-3nq3uc5m
> >  exception @ swift-int-staging.k, line: 165
> > Caused by:
> >  exception @ swift-int-staging.k, line: 160
> > Caused by: Block task failed: 0302-2109420-000000 Block task ended
> > prematurely
> >
> >  In the log, I see the qsub call being made and a jobid is returned.
> > However, I could not figure what is the cause for the task to fail.
> >
> >  One more thing I noticed when translating from old sites conf to new is
> > that the new conf did not accept the property "globus:mode = script".
> >
> >  A full run log is attached. Thanks for any suggestions.
> >
> >  Thanks,
> > Ketan
> >
> >
> > _______________________________________________
> > Swift-user mailing listSwift-user at ci.uchicago.eduhttps://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
> >
> >
> > --
> > Michael Wilde
> > Mathematics and Computer Science          Computation Institute
> > Argonne National Laboratory               The University of Chicago
> >
> >
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> > Swift-user at ci.uchicago.edu
> > https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
> >
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