[Swift-user] surveyor

Wed Jan 25 10:22:53 CST 2012

interactive did not seem to work either.  This time this is what I got before I killed it.

Swift trunk swift-r5520 (swift modified locally) cog-r3354

RunID: 20120125-1013-3iuuhmu7
Progress:  time: Wed, 25 Jan 2012 10:13:18 -0600
 [null] )
 [null] /
 [null] -
 [null] )
 [null] ,/1579>
Progress:  time: Wed, 25 Jan 2012 10:13:26 -0600  Initializing site shared directory:1
 [null] 2
 [null]  
 [null] !
 [null]  

On Jan 25, 2012, at 12:04 AM, Mihael Hategan wrote:

> Use "interactive" instead of "password".
> 
> Mihael
> 
> On Tue, 2012-01-24 at 18:17 -0600, Jonathan Monette wrote:
>> That does not seem to work.  It never asks me for a password.  Below is the output from the terminal.  After the "[null]" characters are just cycling really fast.  If I type my OTP there it just starts over, as you can see the repeated attempts before the exception.
>> 
>> [jonmon at communicado: ~/Workspace/Swift/surveyor]$ swift -tc.file tc.data -sites.file sites.xml echo.swift 
>> Swift trunk swift-r5520 (swift modified locally) cog-r3354
>> 
>> RunID: 20120124-1813-0xh284fa
>> Progress:  time: Tue, 24 Jan 2012 18:13:48 -0600  Initializing:1
>> [jonmon] 
>> [null] 
>> Progress:  time: Tue, 24 Jan 2012 18:13:52 -0600  Initializing site shared directory:1
>> [jonmon] 
>> [null] 
>> Progress:  time: Tue, 24 Jan 2012 18:14:18 -0600  Initializing site shared directory:1
>> Progress:  time: Tue, 24 Jan 2012 18:14:20 -0600  Initializing site shared directory:1
>> [jonmon]
>> [null] 
>> EXCEPTION Could not initialize shared directory on surveyor
>> Caused by: null
>> Caused by: org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: org.globus.cog.abstraction.impl.file.FileResourceException: Error while communicating with the SSH server on surveyor.alcf.anl.gov:22
>> Caused by: org.globus.cog.abstraction.impl.file.FileResourceException: Error while communicating with the SSH server on surveyor.alcf.anl.gov:22
>> Caused by: org.globus.cog.abstraction.impl.common.task.InvalidSecurityContextException: Password Authentication failed
>> Progress:  time: Tue, 24 Jan 2012 18:14:35 -0600  Failed:1
>> Execution failed:
>> 	Password Authentication failed
>> On Jan 24, 2012, at 6:04 PM, Michael Wilde wrote:
>> 
>>> Jon, try configuring auth.defaults as you would for a password login, but dont specify a password. Swift should then prompt you for one (with a text prompt, assuming you are running Swift in a non-X setting).  E.g.:
>>> 
>>> login1.pads.ci.uchicago.edu.type=password
>>> login1.pads.ci.uchicago.edu.username=wilde
>>> 
>>> I dont know if the ssh provider will maintain a connection so that you only need to provide the OTP once. That might be an issue, if not.
>>> 
>>> - Mike
>>> 
>>> ----- Original Message -----
>>>> From: "Jonathan Monette" <jonmon at mcs.anl.gov>
>>>> To: "swift user" <swift-user at ci.uchicago.edu>
>>>> Sent: Tuesday, January 24, 2012 5:32:26 PM
>>>> Subject: [Swift-user] surveyor
>>>> Hello,
>>>> I am trying to run on survey from communicado. Below are the config
>>>> files. What other options are there for auth.defaults. I do not have
>>>> an ssh key set up on surveyor so I can't say
>>>> surveyor.alcf.anl.gov.type=key. The only other way to access surveyor
>>>> is with OTP. Since I am using surveyor as a stepping stone to
>>>> intrepid(which only has OTP) how do I specify to Swift to use OTP in
>>>> auth.defaults. I was trying to use the new ssh-cl provider but that is
>>>> only for execution. Swift complains about not being able to create the
>>>> share directory so I assumed I couldn't say <filesystem="local"/> so I
>>>> have been trying to change it to ssh.
>>>> 
>>>> sites.xml
>>>> =======
>>>> <config>
>>>> <pool handle="surveyor">
>>>> <execution provider="coaster" jobmanager="ssh-cl:cobalt"
>>>> url="surveyor.alcf.anl.gov" />
>>>> <filesystem provider="ssh" url="surveyor.alcf.anl.gov" />
>>>> <!-- <profile namespace="globus"
>>>> key="internalHostname">172.17.3.13</profile> -->
>>>> <profile namespace="globus" key="project">MTCScienceApps</profile>
>>>> <profile namespace="globus" key="queue">short</profile>
>>>> <profile namespace="globus" key="kernelprofile">zeptoos</profile>
>>>> <profile namespace="globus" key="alcfbgpnat">true</profile>
>>>> <profile namespace="karajan" key="jobthrottle">21</profile>
>>>> <profile namespace="karajan" key="initialScore">10000</profile>
>>>> <profile namespace="globus" key="jobsPerNode">1</profile>
>>>> <profile namespace="globus" key="workerLoggingLevel">DEBUG</profile>
>>>> <profile namespace="globus" key="slots">1</profile>
>>>> <profile namespace="globus" key="maxTime">900</profile> <!-- seconds
>>>> -->
>>>> <profile namespace="globus" key="nodeGranularity">64</profile>
>>>> <profile namespace="globus" key="maxNodes">64</profile>
>>>> <workdirectory>/home/jonmon/swift.workdir</workdirectory>
>>>> </pool>
>>>> </config>
>>>> 
>>>> tc
>>>> =======
>>>> surveyor echo /bin/echo INSTALLED INTEL32::LINUX
>>>> surveyor cat /bin/cat INSTALLED INTEL32::LINUX
>>>> surveyor ls /bin/ls INSTALLED INTEL32::LINUX
>>>> surveyor grep /bin/grep INSTALLED INTEL32::LINUX
>>>> surveyor sort /bin/sort INSTALLED INTEL32::LINUX
>>>> surveyor paste /bin/paste INSTALLED INTEL32::LINUX
>>>> surveyor wc /usr/bin/wc INSTALLED INTEL32::LINUX
>>>> 
>>>> swiftscirpt
>>>> ========
>>>> type file;
>>>> 
>>>> app (file o) echo()
>>>> {
>>>> echo "Hello World!!!" stdout=@o;
>>>> }
>>>> 
>>>> file output<"hello.txt">;
>>>> 
>>>> output = echo();
>>>> 
>>>> _______________________________________________
>>>> Swift-user mailing list
>>>> Swift-user at ci.uchicago.edu
>>>> https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
>>> 
>>> -- 
>>> Michael Wilde
>>> Computation Institute, University of Chicago
>>> Mathematics and Computer Science Division
>>> Argonne National Laboratory
>>> 
>> 
>> _______________________________________________
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>> Swift-user at ci.uchicago.edu
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> 
> 