[Swift-user] queue problem?

[Sheri Mickelson]

I'm seeing a different error now:
mapper.existing() returned a path [3] that it cannot subsequently map

It starts up, but dies shortly after that.  I attached the log file.

-Sheri

Justin M Wozniak wrote:
> 
> That's probably a perms thing, I just reapplied the permissions, please 
> try again.
> 
> On Mon, 16 May 2011, Sheri Mickelson wrote:
> 
>> Hi Justin,
>>
>> I'm getting this error when swift tries to run:
>>
>> Exception in thread "main" java.lang.NoClassDefFoundError: 
>> org/griphyn/vdl/karajan/Loader
>> Caused by: java.lang.ClassNotFoundException: 
>> org.griphyn.vdl.karajan.Loader
>>     at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
>>     at java.security.AccessController.doPrivileged(Native Method)
>>     at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
>>     at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
>>     at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
>>     at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
>> Could not find the main class: org.griphyn.vdl.karajan.Loader.  
>> Program will exit.
>>
>> -Sheri
>>
>> Justin M Wozniak wrote:
>>>
>>> Let's go with my trunk-based installation in the location below for 
>>> now. I tried testing this again over the weekend but did not get 
>>> through the queue.  I have already set up the additional logging in 
>>> this installation.
>>>
>>> /homes/wozniak/Public/cog/modules/swift/dist/swift-svn/bin/swift
>>>
>>>     Justin
>>>
>>> On Fri, 13 May 2011, Sheri Mickelson wrote:
>>>
>>>> Here's the log file.
>>>> This is the first time I'm running this version of swift on fusion.  
>>>> I had done my development work with this swift version on an mcs 
>>>> compute machine.
>>>>
>>>> -Sheri
>>>>
>>>> Justin M Wozniak wrote:
>>>>> Hello
>>>>>     Can you send the log for this run?
>>>>>     Is this a new issue that appeared after an update?
>>>>>     Also, in any future runs regarding this issue, please add
>>>>>
>>>>> log4j.logger.org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor 
>>>>> = DEBUG
>>>>>
>>>>> (one line) to your etc/log4j.properties file.
>>>>>
>>>>>     Thanks
>>>>>     Justin
>>>>>
>>>>> On Fri, 13 May 2011, Sheri Mickelson wrote:
>>>>>
>>>>>> I'm running into a problem running swift version 0.92.1 on fusion 
>>>>>> with coasters.
>>>>>> This is the error I'm seeing:
>>>>>>
>>>>>>
>>>>>>
>>>>>> ----------------------------------------------------------------------------- 
>>>>>> Progress:  Selecting site:168  Submitted:23  Active:2
>>>>>> Progress:  Selecting site:168  Submitted:23  Active:1  Checking 
>>>>>> status:1
>>>>>> Progress:  Selecting site:167  Stage in:1  Submitted:22  Active:2 
>>>>>> Finished successfully:1
>>>>>> queuedsize > 0 but no job dequeued. Queued: {}
>>>>>> java.lang.Throwable
>>>>>>     at 
>>>>>> org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.requeueNonFitting(BlockQueueProcessor.java:252) 
>>>>>>
>>>>>>     at 
>>>>>> org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.updatePlan(BlockQueueProcessor.java:520) 
>>>>>>
>>>>>>     at 
>>>>>> org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.run(BlockQueueProcessor.java:109) 
>>>>>> queuedsize > 0 but no job dequeued. Queued: {}
>>>>>> java.lang.Throwable
>>>>>>     at 
>>>>>> org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.requeueNonFitting(BlockQueueProcessor.java:252) 
>>>>>>
>>>>>>     at 
>>>>>> org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.updatePlan(BlockQueueProcessor.java:520) 
>>>>>>
>>>>>>     at 
>>>>>> org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.run(BlockQueueProcessor.java:109) 
>>>>>> Shutting down worker
>>>>>>
>>>>>> Shutting down worker
>>>>>>
>>>>>> Shutting down worker
>>>>>>
>>>>>>
>>>>>> ----------------------------------------------------------------------------- 
>>>>>> And here's my sites file:
>>>>>>
>>>>>>
>>>>>>
>>>>>> ----------------------------------------------------------------------------- 
>>>>>> <config>
>>>>>> <pool handle="fusion">
>>>>>>  <execution jobmanager="local:pbs" provider="coaster" url="none"/>
>>>>>>  <profile namespace="globus" key="maxtime">3600</profile>
>>>>>>  <profile namespace="globus" key="workersPerNode">1</profile>
>>>>>>  <profile namespace="globus" key="slots">1</profile>
>>>>>>  <profile namespace="globus"  key="nodeGranularity">4</profile>
>>>>>>  <profile namespace="globus" key="maxNodes">2</profile>
>>>>>>  <profile namespace="globus" key="queue">batch</profile>
>>>>>>  <profile namespace="karajan" key="jobThrottle">0.23</profile>
>>>>>>  <profile namespace="karajan" key="initialScore">10000</profile>
>>>>>>  <profile namespace="globus" key="project">parvis</profile>
>>>>>>  <profile namespace="globus"  key="lowOverAllocation">100</profile>
>>>>>>  <profile namespace="globus"  key="highOverAllocation">100</profile>
>>>>>>  <filesystem provider="local"/>
>>>>>>  <workdirectory>/fusion/gpfs/home/mickelso/amwg-swift/swift/</workdirectory> 
>>>>>> </pool>
>>>>>> </config>
>>>>>>
>>>>>>
>>>>>> ----------------------------------------------------------------------------- 
>>>>>> Do you know what might be causing this?
>>>>>>
>>>>>> Thanks, Sheri
>>>>>> _______________________________________________
>>>>>> Swift-user mailing list
>>>>>> Swift-user at ci.uchicago.edu
>>>>>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
>>>>>>
>>>>>
>>>>
>>>
>>
> 
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