[Swift-user] PADS

[Mihael Hategan]

Ok. I don't think that's related to my commits.

On Sun, 2010-10-03 at 13:44 -0500, Jonathan Monette wrote:
> Here is the compile error:
> generateVersion:
> 
> antlr:
>       [java] ANTLR Parser Generator   Version 2.7.5 (20050128)   
> 1989-2005 jGuru.com
>       [java] resources/swiftscript.g:1028: warning:nondeterminism upon
>       [java] resources/swiftscript.g:1028:     k==1:LBRACK
>       [java] resources/swiftscript.g:1028:     
> k==2:ID,STRING_LITERAL,LBRACK,LPAREN,AT,PLUS,MINUS,STAR,NOT,INT_LITERAL,FLOAT_LITERAL,"true","false"
>       [java] resources/swiftscript.g:1028:     between alt 1 and exit 
> branch of block
> 
> compileSchema:
>       [java] IO Error java.io.FileNotFoundException: 
> /tmp/xbean5901864127478979310.d/classes/schemaorg_apache_xmlbeans/src/swiftscript.xsd 
> (No such file or directory)
>       [java] Time to build schema type system: 0.559 seconds
>       [java] Exception in thread "main" 
> org.apache.xmlbeans.SchemaTypeLoaderException: 
> /tmp/xbean5901864127478979310.d/classes/schemaorg_apache_xmlbeans/system/s4846B13C10E24B6C12C8DCBE3348DA75/procedure8537type.xsb 
> (No such file or directory) 
> (schemaorg_apache_xmlbeans.system.s4846B13C10E24B6C12C8DCBE3348DA75.procedure8537type) 
> - code 9
>       [java]     at 
> org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl$XsbReader.getSaverStream(SchemaTypeSystemImpl.java:2214)
>       [java]     at 
> org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl$XsbReader.writeRealHeader(SchemaTypeSystemImpl.java:1589)
>       [java]     at 
> org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl.saveType(SchemaTypeSystemImpl.java:1440)
>       [java]     at 
> org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl.saveTypesRecursively(SchemaTypeSystemImpl.java:1316)
>       [java]     at 
> org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl.save(SchemaTypeSystemImpl.java:1291)
>       [java]     at 
> org.apache.xmlbeans.impl.tool.SchemaCompiler.compile(SchemaCompiler.java:1098)
>       [java]     at 
> org.apache.xmlbeans.impl.tool.SchemaCompiler.main(SchemaCompiler.java:368)
> 
> BUILD FAILED
> /autonfs/home/jonmon/Library/Swift/trunk/cog/modules/swift/build.xml:247: Java 
> returned: 1
> 
> and here is the run error I receive once I compile on a different machine:
> Failed to transfer wrapper log from 
> unrectified-20101003-1339-voon0t62/info/l on pads
> Execution failed:
>      Failed to transfer wrapper log from 
> unrectified-20101003-1339-voon0t62/info/8 on pads
> Exception in mProject:
> Arguments: [-X, raw_dir/2mass-atlas-000713s-j0760245.fits, 
> proj_dir/proj_2mass-atlas-000713s-j0760245.fits, header.hdr]
> Host: pads
> Directory: unrectified-20101003-1339-voon0t62/jobs/l/mProject-lvknimzj
> stderr.txt:
> 
> stdout.txt:
> 
> ----
> 
> Caused by:
>      Task failed:
> org.globus.cog.abstraction.impl.scheduler.common.ProcessException: 
> Exitcode file 
> (/home/jonmon/.globus/scripts/PBS6388672747278247642.submit.exitcode) 
> not found 5 queue polls after the job was reported done
>      at 
> org.globus.cog.abstraction.impl.scheduler.common.Job.close(Job.java:66)
>      at 
> org.globus.cog.abstraction.impl.scheduler.common.Job.setState(Job.java:177)
>      at 
> org.globus.cog.abstraction.impl.scheduler.pbs.QueuePoller.processStdout(QueuePoller.java:126)
>      at 
> org.globus.cog.abstraction.impl.scheduler.common.AbstractQueuePoller.pollQueue(AbstractQueuePoller.java:169)
>      at 
> org.globus.cog.abstraction.impl.scheduler.common.AbstractQueuePoller.run(AbstractQueuePoller.java:82)
>      at java.lang.Thread.run(Thread.java:619)
> 
> The run directory with the files needed to execute and log files is in 
> ~jonmon/Workspace/Swift/Montage/katz_slides_test/run.0001
> 
> On 10/3/10 1:30 PM, Mihael Hategan wrote:
> > On Sun, 2010-10-03 at 13:27 -0500, Jonathan Monette wrote:
> >> Hello,
> >>       Anyone having a problem using Swift on PADS?  I updated Swift and
> >> cog to the most recent from trunk and now I cannot compile Swift on
> >> PADS.
> > I made some recent commits which might be the cause. But I need specific
> > errors.
> >
> > Mihael
> >
> >>    I have to use bridled or another ci machine that shares the
> >> filesystem and compile there.  I then come back to PADS to execute my
> >> swift script and get all sorts of errors.  Is anyone experiencing
> >> similar problems when using PADS?
> >>
> >
> 
> -- 
> Jon
> 
> Computers are incredibly fast, accurate, and stupid. Human beings are incredibly slow, inaccurate, and brilliant. Together they are powerful beyond imagination.
> - Albert Einstein
>