[Swift-user] PADS

[Jonathan Monette]

  Here is the compile error:
generateVersion:

antlr:
      [java] ANTLR Parser Generator   Version 2.7.5 (20050128)   
1989-2005 jGuru.com
      [java] resources/swiftscript.g:1028: warning:nondeterminism upon
      [java] resources/swiftscript.g:1028:     k==1:LBRACK
      [java] resources/swiftscript.g:1028:     
k==2:ID,STRING_LITERAL,LBRACK,LPAREN,AT,PLUS,MINUS,STAR,NOT,INT_LITERAL,FLOAT_LITERAL,"true","false"
      [java] resources/swiftscript.g:1028:     between alt 1 and exit 
branch of block

compileSchema:
      [java] IO Error java.io.FileNotFoundException: 
/tmp/xbean5901864127478979310.d/classes/schemaorg_apache_xmlbeans/src/swiftscript.xsd 
(No such file or directory)
      [java] Time to build schema type system: 0.559 seconds
      [java] Exception in thread "main" 
org.apache.xmlbeans.SchemaTypeLoaderException: 
/tmp/xbean5901864127478979310.d/classes/schemaorg_apache_xmlbeans/system/s4846B13C10E24B6C12C8DCBE3348DA75/procedure8537type.xsb 
(No such file or directory) 
(schemaorg_apache_xmlbeans.system.s4846B13C10E24B6C12C8DCBE3348DA75.procedure8537type) 
- code 9
      [java]     at 
org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl$XsbReader.getSaverStream(SchemaTypeSystemImpl.java:2214)
      [java]     at 
org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl$XsbReader.writeRealHeader(SchemaTypeSystemImpl.java:1589)
      [java]     at 
org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl.saveType(SchemaTypeSystemImpl.java:1440)
      [java]     at 
org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl.saveTypesRecursively(SchemaTypeSystemImpl.java:1316)
      [java]     at 
org.apache.xmlbeans.impl.schema.SchemaTypeSystemImpl.save(SchemaTypeSystemImpl.java:1291)
      [java]     at 
org.apache.xmlbeans.impl.tool.SchemaCompiler.compile(SchemaCompiler.java:1098)
      [java]     at 
org.apache.xmlbeans.impl.tool.SchemaCompiler.main(SchemaCompiler.java:368)

BUILD FAILED
/autonfs/home/jonmon/Library/Swift/trunk/cog/modules/swift/build.xml:247: Java 
returned: 1

and here is the run error I receive once I compile on a different machine:
Failed to transfer wrapper log from 
unrectified-20101003-1339-voon0t62/info/l on pads
Execution failed:
     Failed to transfer wrapper log from 
unrectified-20101003-1339-voon0t62/info/8 on pads
Exception in mProject:
Arguments: [-X, raw_dir/2mass-atlas-000713s-j0760245.fits, 
proj_dir/proj_2mass-atlas-000713s-j0760245.fits, header.hdr]
Host: pads
Directory: unrectified-20101003-1339-voon0t62/jobs/l/mProject-lvknimzj
stderr.txt:

stdout.txt:

----

Caused by:
     Task failed:
org.globus.cog.abstraction.impl.scheduler.common.ProcessException: 
Exitcode file 
(/home/jonmon/.globus/scripts/PBS6388672747278247642.submit.exitcode) 
not found 5 queue polls after the job was reported done
     at 
org.globus.cog.abstraction.impl.scheduler.common.Job.close(Job.java:66)
     at 
org.globus.cog.abstraction.impl.scheduler.common.Job.setState(Job.java:177)
     at 
org.globus.cog.abstraction.impl.scheduler.pbs.QueuePoller.processStdout(QueuePoller.java:126)
     at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractQueuePoller.pollQueue(AbstractQueuePoller.java:169)
     at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractQueuePoller.run(AbstractQueuePoller.java:82)
     at java.lang.Thread.run(Thread.java:619)

The run directory with the files needed to execute and log files is in 
~jonmon/Workspace/Swift/Montage/katz_slides_test/run.0001

On 10/3/10 1:30 PM, Mihael Hategan wrote:
> On Sun, 2010-10-03 at 13:27 -0500, Jonathan Monette wrote:
>> Hello,
>>       Anyone having a problem using Swift on PADS?  I updated Swift and
>> cog to the most recent from trunk and now I cannot compile Swift on
>> PADS.
> I made some recent commits which might be the cause. But I need specific
> errors.
>
> Mihael
>
>>    I have to use bridled or another ci machine that shares the
>> filesystem and compile there.  I then come back to PADS to execute my
>> swift script and get all sorts of errors.  Is anyone experiencing
>> similar problems when using PADS?
>>
>

-- 
Jon

Computers are incredibly fast, accurate, and stupid. Human beings are incredibly slow, inaccurate, and brilliant. Together they are powerful beyond imagination.
- Albert Einstein