[Swift-user] swift returns error on pads
Zhao Zhang
zhaozhang at uchicago.edu
Sun Feb 28 00:45:41 CST 2010
Thanks, Allan. But I still got the same error.
zhao
Allan Espinosa wrote:
> I think it should be workersPerNode
>
> On Sun, Feb 28, 2010 at 12:08:12AM -0600, Zhao Zhang wrote:
>
>> Hi,
>>
>> I have a following error message from swift when I ran it on pads
>> with coaster. The swift
>> I am running is at
>> [zzhang at login2 final]$ which swift
>> /home/wilde/bigdata/swift/bin/swift
>>
>> I am confused about the configuration settings in the sites.xml
>> file. Could anybody point the
>> error in the settings? thanks.
>>
>> Best
>> zhao
>>
>> PS: I am pasting my pbs.xml and stdout from swift here.
>>
>> [zzhang at login2 final]$ cat pbs.xml
>> <config>
>>
>> <pool handle="pbs">
>>
>> <profile namespace="globus" key="maxwalltime">00:00:10</profile>
>> <profile namespace="globus" key="maxtime">1800</profile>
>>
>> <execution provider="coaster" url="none" jobManager="local:pbs"/>
>> <profile namespace="globus" key="coastersPerNode">8</profile>
>>
>> <profile namespace="karajan" key="initialScore">10000</profile>
>> <profile namespace="karajan" key="jobThrottle">.63</profile>
>>
>> <gridftp url="local://localhost" />
>> <workdirectory >/home/zzhang/swiftwork</workdirectory>
>>
>> </pool>
>>
>>
>>
>> [zzhang at login2 final]$ time swift -tc.file ./tc sites.file ./pbs.xml
>> movie.swift
>> Swift svn swift-r3255 (swift modified locally) cog-r2723
>>
>> RunID: 20100228-0003-xeza2uh4
>> Progress:
>> Progress:Progress: uninitialized:3 uninitialized:3
>>
>> Progress: Selecting site:936 Stage in:54 Submitting:1 Submitted:9
>> Progress: Selecting site:936 Stage in:21 Submitted:43
>> Worker task failed: Error submitting block task
>> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
>> Cannot submit job: Could not submit job (qsub reported an exit code
>> of 188).
>> qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes
>>
>> at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)
>> at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
>> at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)
>> at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:66)
>> Caused by:
>> org.globus.cog.abstraction.impl.scheduler.common.ProcessException:
>> Could not submit job (qsub reported an exit code of 188).
>> qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes
>>
>> at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:100)
>> at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)
>> ... 3 more
>> Progress: Selecting site:936 Submitted:63 Active:1
>> Failed to transfer wrapper log from
>> movie-20100228-0003-xeza2uh4/info/v on pbs
>> Execution failed:
>> Exception in transform:
>> Arguments: [training_set_1000/mv_0001283.txt]
>> Host: pbs
>> Directory: movie-20100228-0003-xeza2uh4/jobs/v/transform-vt0goeoj
>> stderr.txt:
>>
>> stdout.txt:
>>
>> ----
>>
>> Caused by:
>> Task failed: Error submitting block task
>> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
>> Cannot submit job: Could not submit job (qsub reported an exit code
>> of 188).
>> qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes
>>
>> at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)
>> at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
>> at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)
>> at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:66)
>> Caused by:
>> org.globus.cog.abstraction.impl.scheduler.common.ProcessException:
>> Could not submit job (qsub reported an exit code of 188).
>> qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes
>>
>> at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:100)
>> at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)
>> ... 3 more
>>
>> Cleaning up...
>> Shutting down service at https://192.5.86.6:50002
>> Got channel MetaChannel: 2090567670 -> null
>> +Canceling job 5536.svc.pads.ci.uchicago.edu
>> Canceling job 5537.svc.pads.ci.uchicago.edu
>> Canceling job 5538.svc.pads.ci.uchicago.edu
>> Failed to shut down block
>> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
>> Can only cancel an active task
>> at org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:177)
>> at org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85)
>> at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:70)
>> at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:96)
>> at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:85)
>> at org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:44)
>> at org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:271)
>> at org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:252)
>> at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdownBlocks(BlockQueueProcessor.java:487)
>> at org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdown(BlockQueueProcessor.java:477)
>> at org.globus.cog.abstraction.coaster.service.job.manager.JobQueue.shutdown(JobQueue.java:70)
>> at org.globus.cog.abstraction.coaster.service.CoasterService.shutdown(CoasterService.java:211)
>> at org.globus.cog.abstraction.coaster.service.ServiceShutdownHandler.requestComplete(ServiceShutdownHandler.java:28)
>> at org.globus.cog.karajan.workflow.service.handlers.RequestHandler.receiveCompleted(RequestHandler.java:84)
>> at org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleRequest(AbstractKarajanChannel.java:348)
>> at org.globus.cog.karajan.workflow.service.channels.AbstractPipedChannel.sendTaggedData(AbstractPipedChannel.java:58)
>> at org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.sendTaggedData(AbstractKarajanChannel.java:126)
>> at org.globus.cog.karajan.workflow.service.commands.Command.send(Command.java:121)
>> at org.globus.cog.karajan.workflow.service.commands.Command.send(Command.java:171)
>> at org.globus.cog.karajan.workflow.service.commands.Command.executeAsync(Command.java:162)
>> at org.globus.cog.abstraction.impl.execution.coaster.ServiceManager$ServiceReaper.run(ServiceManager.java:425)
>>
>
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