[Swift-user] running on teraport

Sat Jun 6 21:31:32 CDT 2009

Youre getting an error when Swift tries to start coasters, because you 
dont have a valid Grid proxy.

You need to do a grid-proxy-init before you run with coasters, even if 
your are using them with jobmanager=local:pbs, because coasters uses 
grid security for its communication channels.

These errors were in your coaster bootstrap log:

java.lang.RuntimeException: Failed to register service
...
Caused by: 
org.globus.cog.karajan.workflow.service.channels.ChannelException: 
Failed to start channel GSSCChannel-https:
//128.135.125.117:50000(1)
...
Caused by: org.globus.gsi.GlobusCredentialException: [JGLOBUS-10] 
Expired credentials (DC=org,DC=doegrids,OU=People,...

in your $HOME.

--

For initial tests, its usually simpler to test using the local pbs 
provider instead of coasters:

<execution provider="pbs" url="none" />

Once that works, try coasters.

- Mike

On 6/6/09 8:47 PM, Hodgess, Erin wrote:
> Hello again.
> 
> I'm running on the teraport, and received all of these messages.
> 
> 
> 
> [erin at tp-login2 bin]$ swift -tc.file tc.data -sites.file sites1.xml 
> fun1.swift
> Swift svn swift-r2950 cog-r2406
> 
> RunID: 20090606-2016-8bxotcug
> Progress:
> Progress:  Selecting site:9  Initializing site shared directory:1
> Progress:  Selecting site:9  Stage in:1
> Progress:  Selecting site:8  Submitting:1  Submitted:1
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/a 
> on teraport
> Progress:  Selecting site:7  Submitting:1  Submitted:1 Failed but can 
> retry:1
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/9 
> on teraport
> Progress:  Selecting site:7  Submitted:1 Failed but can retry:2
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/c 
> on teraport
> Progress:  Selecting site:6  Submitted:1 Failed but can retry:3
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/e 
> on teraport
> Progress:  Selecting site:6 Failed but can retry:4
> Progress:  Selecting site:6 Failed but can retry:4
> Progress:  Selecting site:6 Failed but can retry:4
> Progress:  Selecting site:5  Stage in:1 Failed but can retry:4
> Progress:  Selecting site:5  Submitted:1 Failed but can retry:4
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/h 
> on teraport
> Progress:  Selecting site:5 Failed but can retry:5
> Progress:  Selecting site:5 Failed but can retry:5
> Progress:  Selecting site:5 Failed but can retry:5
> Progress:  Selecting site:4  Stage in:1 Failed but can retry:5
> Progress:  Selecting site:4  Submitted:1 Failed but can retry:5
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/j 
> on teraport
> Progress:  Selecting site:4 Failed but can retry:6
> Progress:  Selecting site:4 Failed but can retry:6
> Progress:  Selecting site:4 Failed but can retry:6
> Progress:  Selecting site:3  Stage in:1 Failed but can retry:6
> Progress:  Selecting site:3  Submitted:1 Failed but can retry:6
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/l 
> on teraport
> Progress:  Selecting site:3 Failed but can retry:7
> Progress:  Selecting site:3 Failed but can retry:7
> Progress:  Selecting site:3 Failed but can retry:7
> Progress:  Selecting site:2  Stage in:1 Failed but can retry:7
> Progress:  Selecting site:2  Submitted:1 Failed but can retry:7
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/n 
> on teraport
> Progress:  Selecting site:2 Failed but can retry:8
> Progress:  Selecting site:2 Failed but can retry:8
> Progress:  Selecting site:2 Failed but can retry:8
> Progress:  Selecting site:1  Stage in:1 Failed but can retry:8
> Progress:  Selecting site:1  Submitted:1 Failed but can retry:8
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/p 
> on teraport
> Progress:  Selecting site:1 Failed but can retry:9
> Progress:  Selecting site:1 Failed but can retry:9
> Progress:  Selecting site:1 Failed but can retry:9
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/r 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitting:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/t 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/v 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/y 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/0 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/2 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/4 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/6 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/8 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/a 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/c 
> on teraport
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> Progress: Failed but can retry:10
> 
> 
> 
> Progress:  Stage in:1 Failed but can retry:9
> Progress:  Submitted:1 Failed but can retry:9
> Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/e 
> on teraport
> Execution failed:
>         Exception in RInvoke:
> Arguments: [ttest1.R, 1, fun.dat]
> Host: teraport
> Directory: fun1-20090606-2016-8bxotcug/jobs/e/RInvoke-enuqrvbj
> stderr.txt:
> 
> stdout.txt:
> 
> ----
> 
> Caused by:
>         Could not submit job
> Caused by:
>         Could not start coaster service
> Caused by:
>         Task ended before registration was received.
> STDOUT:
> STDERR: which: no gmd5sum in 
> (/soft/java-1.6.0_11-sun-r1/bin:/soft/java-1.6.0_11-sun-r1/jre/bin:/soft/apache-ant-1.7.1-r1/bin:/software/common/gx-map-0.5.3.3-r1/bin:/soft/condor-7.0.5-r1/bin:/soft/globus-4.2.1-r1/bin:/soft/globus-4.2.1-r1/sbin:/usr/kerberos/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/local/bin:/software/common/softenv-1.6.0-r1/bin:/home/erin/bin/linux-rhel5-x86_64:/home/erin/bin:/soft/torque-2.3.6-r1/bin:/soft/maui-3.2.6p21-r1/bin:/soft/maui-3.2.6p21-r1/sbin:/soft/matlab-7.7-r1/bin:/soft/osg-client-1.0.0-r1/lcg/bin:/soft/osg-client-1.0.0-r1/srm-client-lbnl/bin:/soft/osg-client-1.0.0-r1/srm-client-fermi/sbin:/soft/osg-client-1.0.0-r1/srm-client-fermi/bin:/soft/osg-client-1.0.0-r1/curl/bin:/soft/osg-client-1.0.0-r1/wget/bin:/soft/osg-client-1.0.0-r1/cert-scripts/bin:/soft/osg-client-1.0.0-r1/glite/sbin:/soft/osg-client-1.0.0-r1/glite/bin:/soft/osg-client-1.0.0-r1/pyglobus-url-copy/bin:/soft/osg-client-1.0.0-r1/pegasus/bin:/soft/osg-client-1.0.0-r1/ant/bin:/soft/osg-client-1.0.0-r1/gpt/sbin:/so
ft/osg-client-1.0.0-r1/globus/bin:/soft/osg-client-1.0.0-r1/globus/sbin:/soft/osg-client-1.0.0-r1/jdk1.5/bin:/soft/osg-client-1.0.0-r1/condor/sbin:/soft/osg-client-1.0.0-r1/condor/bin:/soft/osg-client-1.0.0-r1/logrotate/sbin:/software/common/pacman-3.26-r1/bin:/soft/osg-client-1.0.0-r1/vdt/sbin:/soft/osg-client-1.0.0-r1/vdt/bin:/home/grog/bin/linux-rhel4-ia32:/home/grog/bin:/sw/bin:/sbin:/usr/sbin:/home/erin/bin:/home/erin/cog/modules/swift/dist/swift-svn/bin)
> 
> 
> Caused by:
>         Job failed with an exit code of 1
> Cleaning up...
>  Done
> 
> 
> So anyhow, it doesn't like something.
> 
> Here is the tc.data file:
> erin at tp-login2 bin]$ cat tc.data
> #NOTE WELL: fields in this file must be separated by tabs, not spaces
> #           and there must be no trailing whitespace at the end of each 
> line.
> #
> # sitename      app     pathname        (ignored)       (ignored)       
> profiles
> localhost       echo    /bin/echo       INSTALLED       INTEL32::LINUX  null
> teraport        echo    /bin/echo       INSTALLED       INTEL32::LINUX  null
> localhost       translate       /usr/bin/tr     INSTALLED       
> INTEL32::LINUX  null
> localhost       R       /home/erin/R-2.9.0/bin/R        INSTALLED       
> INTEL32::LINUX  null
> localhost       wc      /usr/bin/wc     INSTALLED       INTEL32::LINUX  null
> localhost       convert /usr/bin/convert        INSTALLED       
> INTEL32::LINUX  null
> localhost       RInvoke /home/erin/R-2.9.0/bin/RInvoke.sh       
> INSTALLED       INTEL32::LINUX  null
> teraport        RInvoke /home/erin/R-2.9.0/bin/RInvoke.sh       
> INSTALLED       INTEL32::LINUX  null
> 
> 
> Erin M. Hodgess, PhD
> Associate Professor
> Department of Computer and Mathematical Sciences
> University of Houston - Downtown
> mailto: hodgesse at uhd.edu
> 
> 
> ------------------------------------------------------------------------
> 
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