[Swift-user] running on teraport
Hodgess, Erin
HodgessE at uhd.edu
Sat Jun 6 20:47:23 CDT 2009
Hello again.
I'm running on the teraport, and received all of these messages.
[erin at tp-login2 bin]$ swift -tc.file tc.data -sites.file sites1.xml fun1.swift
Swift svn swift-r2950 cog-r2406
RunID: 20090606-2016-8bxotcug
Progress:
Progress: Selecting site:9 Initializing site shared directory:1
Progress: Selecting site:9 Stage in:1
Progress: Selecting site:8 Submitting:1 Submitted:1
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/a on teraport
Progress: Selecting site:7 Submitting:1 Submitted:1 Failed but can retry:1
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/9 on teraport
Progress: Selecting site:7 Submitted:1 Failed but can retry:2
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/c on teraport
Progress: Selecting site:6 Submitted:1 Failed but can retry:3
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/e on teraport
Progress: Selecting site:6 Failed but can retry:4
Progress: Selecting site:6 Failed but can retry:4
Progress: Selecting site:6 Failed but can retry:4
Progress: Selecting site:5 Stage in:1 Failed but can retry:4
Progress: Selecting site:5 Submitted:1 Failed but can retry:4
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/h on teraport
Progress: Selecting site:5 Failed but can retry:5
Progress: Selecting site:5 Failed but can retry:5
Progress: Selecting site:5 Failed but can retry:5
Progress: Selecting site:4 Stage in:1 Failed but can retry:5
Progress: Selecting site:4 Submitted:1 Failed but can retry:5
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/j on teraport
Progress: Selecting site:4 Failed but can retry:6
Progress: Selecting site:4 Failed but can retry:6
Progress: Selecting site:4 Failed but can retry:6
Progress: Selecting site:3 Stage in:1 Failed but can retry:6
Progress: Selecting site:3 Submitted:1 Failed but can retry:6
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/l on teraport
Progress: Selecting site:3 Failed but can retry:7
Progress: Selecting site:3 Failed but can retry:7
Progress: Selecting site:3 Failed but can retry:7
Progress: Selecting site:2 Stage in:1 Failed but can retry:7
Progress: Selecting site:2 Submitted:1 Failed but can retry:7
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/n on teraport
Progress: Selecting site:2 Failed but can retry:8
Progress: Selecting site:2 Failed but can retry:8
Progress: Selecting site:2 Failed but can retry:8
Progress: Selecting site:1 Stage in:1 Failed but can retry:8
Progress: Selecting site:1 Submitted:1 Failed but can retry:8
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/p on teraport
Progress: Selecting site:1 Failed but can retry:9
Progress: Selecting site:1 Failed but can retry:9
Progress: Selecting site:1 Failed but can retry:9
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/r on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitting:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/t on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/v on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/y on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/0 on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/2 on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/4 on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/6 on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/8 on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/a on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/c on teraport
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Failed but can retry:10
Progress: Stage in:1 Failed but can retry:9
Progress: Submitted:1 Failed but can retry:9
Failed to transfer wrapper log from fun1-20090606-2016-8bxotcug/info/e on teraport
Execution failed:
Exception in RInvoke:
Arguments: [ttest1.R, 1, fun.dat]
Host: teraport
Directory: fun1-20090606-2016-8bxotcug/jobs/e/RInvoke-enuqrvbj
stderr.txt:
stdout.txt:
----
Caused by:
Could not submit job
Caused by:
Could not start coaster service
Caused by:
Task ended before registration was received.
STDOUT:
STDERR: which: no gmd5sum in (/soft/java-1.6.0_11-sun-r1/bin:/soft/java-1.6.0_11-sun-r1/jre/bin:/soft/apache-ant-1.7.1-r1/bin:/software/common/gx-map-0.5.3.3-r1/bin:/soft/condor-7.0.5-r1/bin:/soft/globus-4.2.1-r1/bin:/soft/globus-4.2.1-r1/sbin:/usr/kerberos/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/local/bin:/software/common/softenv-1.6.0-r1/bin:/home/erin/bin/linux-rhel5-x86_64:/home/erin/bin:/soft/torque-2.3.6-r1/bin:/soft/maui-3.2.6p21-r1/bin:/soft/maui-3.2.6p21-r1/sbin:/soft/matlab-7.7-r1/bin:/soft/osg-client-1.0.0-r1/lcg/bin:/soft/osg-client-1.0.0-r1/srm-client-lbnl/bin:/soft/osg-client-1.0.0-r1/srm-client-fermi/sbin:/soft/osg-client-1.0.0-r1/srm-client-fermi/bin:/soft/osg-client-1.0.0-r1/curl/bin:/soft/osg-client-1.0.0-r1/wget/bin:/soft/osg-client-1.0.0-r1/cert-scripts/bin:/soft/osg-client-1.0.0-r1/glite/sbin:/soft/osg-client-1.0.0-r1/glite/bin:/soft/osg-client-1.0.0-r1/pyglobus-url-copy/bin:/soft/osg-client-1.0.0-r1/pegasus/bin:/soft/osg-client-1.0.0-r1/ant/bin:/soft/osg-client-1.0.0-r1/gpt/sbin:/soft/osg-client-1.0.0-r1/globus/bin:/soft/osg-client-1.0.0-r1/globus/sbin:/soft/osg-client-1.0.0-r1/jdk1.5/bin:/soft/osg-client-1.0.0-r1/condor/sbin:/soft/osg-client-1.0.0-r1/condor/bin:/soft/osg-client-1.0.0-r1/logrotate/sbin:/software/common/pacman-3.26-r1/bin:/soft/osg-client-1.0.0-r1/vdt/sbin:/soft/osg-client-1.0.0-r1/vdt/bin:/home/grog/bin/linux-rhel4-ia32:/home/grog/bin:/sw/bin:/sbin:/usr/sbin:/home/erin/bin:/home/erin/cog/modules/swift/dist/swift-svn/bin)
Caused by:
Job failed with an exit code of 1
Cleaning up...
Done
So anyhow, it doesn't like something.
Here is the tc.data file:
erin at tp-login2 bin]$ cat tc.data
#NOTE WELL: fields in this file must be separated by tabs, not spaces
# and there must be no trailing whitespace at the end of each line.
#
# sitename app pathname (ignored) (ignored) profiles
localhost echo /bin/echo INSTALLED INTEL32::LINUX null
teraport echo /bin/echo INSTALLED INTEL32::LINUX null
localhost translate /usr/bin/tr INSTALLED INTEL32::LINUX null
localhost R /home/erin/R-2.9.0/bin/R INSTALLED INTEL32::LINUX null
localhost wc /usr/bin/wc INSTALLED INTEL32::LINUX null
localhost convert /usr/bin/convert INSTALLED INTEL32::LINUX null
localhost RInvoke /home/erin/R-2.9.0/bin/RInvoke.sh INSTALLED INTEL32::LINUX null
teraport RInvoke /home/erin/R-2.9.0/bin/RInvoke.sh INSTALLED INTEL32::LINUX null
Erin M. Hodgess, PhD
Associate Professor
Department of Computer and Mathematical Sciences
University of Houston - Downtown
mailto: hodgesse at uhd.edu
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