[Swift-user] running a test in R on Clemson-ciTeam

[Hodgess, Erin]

I'm trying to run a test in Swift using R that runs fine on localhost and teraport.

When I switched to Clemson-ciTeam, this is what I got:

$ swift -tc.file tc.data -sites.file sites1g.xml fun3.swift
Swift svn swift-r2950 cog-r2406

RunID: 20090701-1614-abynf6p5
Progress:
Progress:  Selecting site:8  Initializing site shared directory:1  Stage in:1
Progress:  Selecting site:8  Submitting:1  Submitted:1
Progress:  Selecting site:8  Active:1  Checking status:1
Progress:  Selecting site:8 Failed but can retry:2
Progress:  Selecting site:7  Stage in:1 Failed but can retry:2
Progress:  Selecting site:6  Submitted:2 Failed but can retry:2
Progress:  Selecting site:6  Submitted:2 Failed but can retry:2
[erin at tp-login2 bin]$ 

Here is the sites1g.xml file:
$ cat sites1g.xml
<config>

  <pool handle="Clemson-ciTeam" >
    <gridftp  url="gsiftp://osgce.cs.clemson.edu/" />
    <jobmanager universe="vanilla" url="osgce.cs.clemson.edu:2119/jobmanager-condor" major="2" />
    <workdirectory >/home/osg/swiftwork</workdirectory>
  </pool>



</config>

And here is tc.data
[erin at tp-login2 bin]$ cat tc.data
#NOTE WELL: fields in this file must be separated by tabs, not spaces
#           and there must be no trailing whitespace at the end of each line.
#
# sitename      app     pathname        (ignored)       (ignored)       profiles
localhost       echo    /bin/echo       INSTALLED       INTEL32::LINUX  null
teraport        echo    /bin/echo       INSTALLED       INTEL32::LINUX  null
localhost	translate	/usr/bin/tr	INSTALLED	INTEL32::LINUX	null
localhost	R	/home/erin/R-2.9.0/bin/R	INSTALLED	INTEL32::LINUX	null
localhost       wc	/usr/bin/wc     INSTALLED       INTEL32::LINUX	null
localhost       convert	/usr/bin/convert	INSTALLED	INTEL32::LINUX	null
localhost	RInvoke	/home/erin/R-2.9.0/bin/RInvoke.sh	INSTALLED	INTEL32::LINUX	null
teraport	RInvoke /home/erin/R-2.9.0/bin/RInvoke.sh       INSTALLED	INTEL32::LINUX  null
localhost	RPermInv1	/home/erin/R-2.9.0/bin/RPermInv1.sh	INSTALLED	INTEL32::LINUX	null
localhost	RInvoke1	/home/erin/R-2.9.0/bin/RInvoke1.sh	INSTALLED	INTEL32::LINUX	null
Clemson-ciTeam	RInvoke	/home/erin/R-2.9.0/bin/RInvoke.sh	INSTALLED	INTEL32::LINUX	null
[erin at tp-login2 bin]$ 

Does anyone have any suggestions, please?

Thanks,
Erin



Erin M. Hodgess, PhD
Associate Professor
Department of Computer and Mathematical Sciences
University of Houston - Downtown
mailto: hodgesse at uhd.edu

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