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<TITLE>running a test in R on Clemson-ciTeam</TITLE>
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<P><FONT SIZE=2>I'm trying to run a test in Swift using R that runs fine on localhost and teraport.<BR>
<BR>
When I switched to Clemson-ciTeam, this is what I got:<BR>
<BR>
$ swift -tc.file tc.data -sites.file sites1g.xml fun3.swift<BR>
Swift svn swift-r2950 cog-r2406<BR>
<BR>
RunID: 20090701-1614-abynf6p5<BR>
Progress:<BR>
Progress: Selecting site:8 Initializing site shared directory:1 Stage in:1<BR>
Progress: Selecting site:8 Submitting:1 Submitted:1<BR>
Progress: Selecting site:8 Active:1 Checking status:1<BR>
Progress: Selecting site:8 Failed but can retry:2<BR>
Progress: Selecting site:7 Stage in:1 Failed but can retry:2<BR>
Progress: Selecting site:6 Submitted:2 Failed but can retry:2<BR>
Progress: Selecting site:6 Submitted:2 Failed but can retry:2<BR>
[erin@tp-login2 bin]$<BR>
<BR>
Here is the sites1g.xml file:<BR>
$ cat sites1g.xml<BR>
<config><BR>
<BR>
<pool handle="Clemson-ciTeam" ><BR>
<gridftp url="gsiftp://osgce.cs.clemson.edu/" /><BR>
<jobmanager universe="vanilla" url="osgce.cs.clemson.edu:2119/jobmanager-condor" major="2" /><BR>
<workdirectory >/home/osg/swiftwork</workdirectory><BR>
</pool><BR>
<BR>
<BR>
<BR>
</config><BR>
<BR>
And here is tc.data<BR>
[erin@tp-login2 bin]$ cat tc.data<BR>
#NOTE WELL: fields in this file must be separated by tabs, not spaces<BR>
# and there must be no trailing whitespace at the end of each line.<BR>
#<BR>
# sitename app pathname (ignored) (ignored) profiles<BR>
localhost echo /bin/echo INSTALLED INTEL32::LINUX null<BR>
teraport echo /bin/echo INSTALLED INTEL32::LINUX null<BR>
localhost translate /usr/bin/tr INSTALLED INTEL32::LINUX null<BR>
localhost R /home/erin/R-2.9.0/bin/R INSTALLED INTEL32::LINUX null<BR>
localhost wc /usr/bin/wc INSTALLED INTEL32::LINUX null<BR>
localhost convert /usr/bin/convert INSTALLED INTEL32::LINUX null<BR>
localhost RInvoke /home/erin/R-2.9.0/bin/RInvoke.sh INSTALLED INTEL32::LINUX null<BR>
teraport RInvoke /home/erin/R-2.9.0/bin/RInvoke.sh INSTALLED INTEL32::LINUX null<BR>
localhost RPermInv1 /home/erin/R-2.9.0/bin/RPermInv1.sh INSTALLED INTEL32::LINUX null<BR>
localhost RInvoke1 /home/erin/R-2.9.0/bin/RInvoke1.sh INSTALLED INTEL32::LINUX null<BR>
Clemson-ciTeam RInvoke /home/erin/R-2.9.0/bin/RInvoke.sh INSTALLED INTEL32::LINUX null<BR>
[erin@tp-login2 bin]$<BR>
<BR>
Does anyone have any suggestions, please?<BR>
<BR>
Thanks,<BR>
Erin<BR>
<BR>
<BR>
<BR>
Erin M. Hodgess, PhD<BR>
Associate Professor<BR>
Department of Computer and Mathematical Sciences<BR>
University of Houston - Downtown<BR>
mailto: hodgesse@uhd.edu<BR>
<BR>
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