[Swift-user] Exception in getFile

[Mihael Hategan]

It doesn't look like the application runs.

Can you try a globusrun or cog-job-submit with some dummy sleep job and
see if it works (i.e. if you can see it with bjobs/bhist)?

On Tue, 2007-08-21 at 16:42 -0500, Jing Tie wrote:
> Hi,
> 
> I tried SID application on TTU-ANTAEUS site. It works fine with
> jobmanager, but has "exception in getFile" problem with
> jobmanager-lsf. btw: globus-job-run
> antaeus.hpcc.ttu.edu/jobmanager-lsf /bin/hostname works fine.
> 
> site: TTU-ANTAEUS
> gatekeeper: antaeus.hpcc.ttu.edu
> app_dir: /mnt/lustre/antaeus/apps
> data_dir: /mnt/hep/osg
> lsf_dir: /opt/lsfhpc/6.2/linux2.6-glibc2.3-x86_64/bin
> R_dir: /mnt/lustre/antaeus/apps/R-2.5.1/bin
> 
> --------------
> output:
> cwtsmall failed
> Provenance graph saved in sid-wf1-lyk35d4m9l2y0.dot
> The following errors have occurred:
> 1. Application "cwtsmall" failed (Exception in getFile 
> Caused by:
>         Server refused performing the request. Custom message:  (error
> code 1) [Nested exception message:  Custom message: Unexpected reply:
> 500-Command failed. :
> globus_gridftp_server_file.c:globus_l_gfs_file_send:2190: 
> 500-globus_l_gfs_file_open failed.
> 500-globus_gridftp_server_file.c:globus_l_gfs_file_open:1694:
> 500-globus_xio_register_open failed.
> 500-globus_xio_file_driver.c:globus_l_xio_file_open:438:
> 500-Unable to open
> file /mnt/hep/osg/sid-wf1-lyk35d4m9l2y0/shared//101-FBchannel15_cwt-
> avgResults.Rdata
> 500-globus_xio_file_driver.c:globus_l_xio_file_open:381:
> 500-System error in open: No such file or directory
> 500-globus_xio: A system call failed: No such file or directory
> 500 End.])
>         Arguments: "scripts/runWaveletsAvg.R, 101, FB" 
>         Host: TTU-ANTAEUS
>         Directory: sid-wf1-lyk35d4m9l2y0/cwtsmall-91u714gi
>         STDERR: 
>         STDOUT:
> ----------------------------
> 
> But there is only one directory under
> $data_dir/sid-wf1-lyk35d4m9l2y0/, i.e. shared, and no output files are
> found.
> 
> Do I miss some special configurations for LSF?
> 
> Thanks a lot,
> Jing
> 
> 
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