[Swift-user] Exception in getFile

[Jing Tie]

Hi,

I tried SID application on TTU-ANTAEUS site. It works fine with jobmanager,
but has "exception in getFile" problem with jobmanager-lsf. btw:
globus-job-run antaeus.hpcc.ttu.edu/jobmanager-lsf /bin/hostname works fine.

site: TTU-ANTAEUS
gatekeeper: antaeus.hpcc.ttu.edu
app_dir: /mnt/lustre/antaeus/apps
data_dir: /mnt/hep/osg
lsf_dir: /opt/lsfhpc/6.2/linux2.6-glibc2.3-x86_64/bin
R_dir: /mnt/lustre/antaeus/apps/R-2.5.1/bin

--------------
output:
cwtsmall failed
Provenance graph saved in sid-wf1-lyk35d4m9l2y0.dot
The following errors have occurred:
1. Application "cwtsmall" failed (Exception in getFile
Caused by:
        Server refused performing the request. Custom message:  (error code
1) [Nested exception message:  Custom message: Unexpected reply: 500-Command
failed. : globus_gridftp_server_file.c:globus_l_gfs_file_send:2190:
500-globus_l_gfs_file_open failed.
500-globus_gridftp_server_file.c:globus_l_gfs_file_open:1694:
500-globus_xio_register_open failed.
500-globus_xio_file_driver.c:globus_l_xio_file_open:438:
500-Unable to open file
/mnt/hep/osg/sid-wf1-lyk35d4m9l2y0/shared//101-FBchannel15_cwt-
avgResults.Rdata
500-globus_xio_file_driver.c:globus_l_xio_file_open:381:
500-System error in open: No such file or directory
500-globus_xio: A system call failed: No such file or directory
500 End.])
        Arguments: "scripts/runWaveletsAvg.R, 101, FB"
        Host: TTU-ANTAEUS
        Directory: sid-wf1-lyk35d4m9l2y0/cwtsmall-91u714gi
        STDERR:
        STDOUT:
----------------------------

But there is only one directory under $data_dir/sid-wf1-lyk35d4m9l2y0/, i.e.
shared, and no output files are found.

Do I miss some special configurations for LSF?

Thanks a lot,
Jing
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