[Swift-user] Exception in getFile

[Jing Tie]

Hi,

Here is another problem. It seems like something wrong with GFS system.

site: MIT_CMS
gatekeeper: ce01.cmsaf.mit.edu
app_dir: /osg/app
data_dir: /osg/data
condor_dir: /usr/local/condor/bin
R_dir: /osg/app/R-2.5.1/bin/R

output:
Application exception: Exception in getFile
        task:transfer @ vdl-int.k, line: 235
        vdl:dostageout @ vdl-int.k, line: 378
        vdl:execute2 @ execute-default.k, line: 22
        vdl:execute @ sid-wf1.kml, line: 20
        wavelettransf @ sid-wf1.kml, line: 362
        batchtrials @ sid-wf1.kml, line: 402
        vdl:mains @ sid-wf1.kml, line: 399
Caused by: org.globus.cog.abstraction.impl.file.FileResourceException:
Exception in getFile
Caused by: org.globus.ftp.exception.ServerException: Server refused
performing the request. Custom message:  (error code 1)  cwtsmall failed
Provenance graph saved in sid-wf1-7thy5mbfh09e1.dot
The following errors have occurred:
1. Application "cwtsmall" failed (Exception in getFile
Caused by:
Server refused performing the request. Custom message:  (error code 1)
[Nested exception message:  Nested exception is
org.globus.ftp.exception.UnexpectedReplyCodeException :
Custom message: Unexpected reply:
500-Command failed. :
globus_gridftp_server_file.c:globus_l_gfs_file_send:2190:
500-globus_l_gfs_file_open failed.
500-globus_gridftp_server_file.c:globus_l_gfs_file_open:1694:
500-globus_xio_register_open failed.
500-globus_xio_file_driver.c:globus_l_xio_file_open:438:
500-Unable to open file
/osgfs/data/sid-wf1-7thy5mbfh09e1/shared//101-FBchannel16_cwt-
avgResults.Rdata
500-globus_xio_file_driver.c:globus_l_xio_file_open:381:
500-System error in open: No such file or directory
500-globus_xio: A system call failed: No such file or directory
500 End.])
        Arguments: "scripts/runWaveletsAvg.R, 101, FB"
        Host: UCSDT2
        Directory: sid-wf1-7thy5mbfh09e1/cwtsmall-mb3l3rfi
        STDERR:
        STDOUT:
Errors detected. Cleanup not done.
Execution completed with errors
        sys:throw @ vdl.k, line: 140
        vdl:mains @ sid-wf1.kml, line: 399
        at org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java
:413)
        at org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java
:417)
        at org.globus.cog.karajan.workflow.nodes.GenerateErrorNode.post (
GenerateErrorNode.java:28)
        at
org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted
        at
org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(
Sequential.java :33)
        at org.globus.cog.karajan.workflow.nodes.FlowNode.event(
FlowNode.java:334)
        at org.globus.cog.karajan.workflow.events.EventBus.send(
EventBus.java:123)
        at org.globus.cog.karajan.workflow.events.EventBus.sendHooked (
EventBus.java:97)
        at
org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(
FlowNode.java:172)
        at org.globus.cog.karajan.workflow.nodes.FlowNode.complete(
FlowNode.java:298)
        at
org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.executeChildren
(AbstractFunction.java:37)
        at org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(
FlowContainer.java:63)
        at org.globus.cog.karajan.workflow.nodes.FlowNode.restart (
FlowNode.java:239)
        at org.globus.cog.karajan.workflow.nodes.FlowNode.start(
FlowNode.java:280)
        at org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(
FlowNode.java:392)
        at org.globus.cog.karajan.workflow.nodes.FlowNode.event (
FlowNode.java:331)
        at org.globus.cog.karajan.workflow.FlowElementWrapper.event(
FlowElementWrapper.java:227)
        at org.globus.cog.karajan.workflow.events.EventBus.send(
EventBus.java:123)
        at org.globus.cog.karajan.workflow.events.EventBus.sendHooked (
EventBus.java:97)
        at org.globus.cog.karajan.workflow.events.EventWorker.run(
EventWorker.java:69)

Many thanks,
Jing
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