[Swift-devel] ssh-cl how to tell coaster bootstrap to run with limited java heap space

Ketan Maheshwari ketancmaheshwari at gmail.com
Thu Sep 19 15:43:10 CDT 2013


SDSC Gordon admins have limited java heap space to 256 on login nodes.

This is enabled via the following environment variable:

JAVA_TOOL_OPTIONS=-Xmx256m

It seems coaster bootstrap does not like this:

mdw$ swift -sites.file sites.gordon.xml -tc.file apps -config cf
workflow.swift
Swift trunk swift-r7089 cog-r3775
RunID: 20130919-2038-jef0ns83
Progress:  time: Thu, 19 Sep 2013 20:38:42 +0000
Progress:  time: Thu, 19 Sep 2013 20:38:43 +0000  Submitting:2

Execution failed:
Exception in matrixgen:
    Arguments: [2544, 3300, mA.dat]
    Host: gordon
    Directory: workflow-20130919-2038-jef0ns83/jobs/a/matrixgen-a1rnkhfl
    exception @ swift-int-staging.k, line: 162
Caused by: null
Caused by:
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could
not submit job
Caused by:
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could
not start coaster service
Caused by:
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Task
ended before registration was received.

Picked up JAVA_TOOL_OPTIONS: -Xmx256m
/bin/bash: line 54: 33675 Aborted                 /usr/java/latest/bin/java
-Djava=/usr/java/latest/bin/java -DGLOBUS_TCP_PORT_RANGE=50000,51000
-DX509_USER_PROXY=/home/ketan/.globus/sshproxy-316831905-1379663604
-DX509_CERT_DIR=/home/ketan/.globus/sshCAcert-316831905-1379663604.pem
-DGLOBUS_HOSTNAME=gordon.sdsc.xsede.org -Duser.home=/home/ketan -jar
/tmp/bootstrap.RWIqFu http://swift.rcc.uchicago.edu:50001
https://128.135.112.73:50000 11836079986


Do I understand right that this is indeed the java heap space issue? or is
it something else that I could work around with? Thanks for any ideas.

-- 
Ketan
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