[Swift-devel] resume feature in trunk
Ketan Maheshwari
ketancmaheshwari at gmail.com
Fri Oct 18 10:24:20 CDT 2013
Works, thanks!
On Thu, Oct 17, 2013 at 6:02 PM, Mihael Hategan <hategan at mcs.anl.gov> wrote:
> Fixed in r7175.
>
> Mihael
>
> On Sat, 2013-10-05 at 18:41 -0500, Ketan Maheshwari wrote:
> > Attached the dummy apps now.
> >
> >
> > On Sat, Oct 5, 2013 at 6:40 PM, Ketan Maheshwari <
> ketancmaheshwari at gmail.com
> > > wrote:
> >
> > > Hi Mihael,
> > >
> > > Attached is the simplified version of my script and apps which has the
> > > same resume behavior I reported.
> > >
> > > Thanks,
> > > Ketan
> > >
> > >
> > > On Thu, Oct 3, 2013 at 9:52 PM, Mihael Hategan <hategan at mcs.anl.gov
> >wrote:
> > >
> > >> Yeah, please send me the script or a simplified one. I have been using
> > >> resume for a while, so it's not a general resume issue.
> > >>
> > >> Mihael
> > >>
> > >> On Thu, 2013-10-03 at 20:45 -0500, Ketan Maheshwari wrote:
> > >> > Hi,
> > >> >
> > >> > It seems that the resume feature in trunk has some problems.
> > >> >
> > >> > When I try to resume a workflow I am running, I get the following
> error:
> > >> >
> > >> > $ swift -sites.file sites.gordon.xml -tc.file apps -config cf
> > >> > workflow.swift -resume workflow-20131004-0107-09cxqmd5.0.rlog
> > >> > Swift trunk swift-r7089 cog-r3775 (cog modified locally)
> > >> > RunID: 20131004-0142-7l1ym0y9
> > >> > Progress: time: Fri, 04 Oct 2013 01:42:37 +0000
> > >> >
> > >> > Execution failed:
> > >> > java.lang.IndexOutOfBoundsException: Invalid index [14] for mA_file
> > >> > swift:stageIn @ workflow, line: 347
> > >> > Caused by: java.lang.IndexOutOfBoundsException: Invalid index [14]
> for
> > >> > mA_file
> > >> > at
> > >> >
> > >>
> org.griphyn.vdl.mapping.AbstractDataNode.checkNoValue(AbstractDataNode.java:716)
> > >> > at
> > >> >
> > >>
> org.griphyn.vdl.mapping.AbstractDataNode.waitFor(AbstractDataNode.java:682)
> > >> > at org.griphyn.vdl.karajan.lib.Stagein.function(Stagein.java:81)
> > >> > at
> > >>
> org.griphyn.vdl.karajan.lib.SwiftFunction.runBody(SwiftFunction.java:108)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.InternalFunction.run(InternalFunction.java:155)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:66)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > >> > at
> > >>
> org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.user.Function.runBody(Function.java:99)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.runBody(InvocationWrapper.java:245)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:69)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > >> > at
> > >>
> org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > >> > at
> > >>
> org.globus.cog.karajan.compiled.nodes.UParallel$1.run(UParallel.java:68)
> > >> > at k.thr.LWThread.run(LWThread.java:228)
> > >> > at
> > >> >
> > >>
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> > >> > at
> > >> >
> > >>
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > >> > at java.lang.Thread.run(Thread.java:724)
> > >> >
> > >> > I am trying to reproduce with a simpler example.
> > >> >
> > >> > Thanks,
> > >> > Hi,
> > >> >
> > >> >
> > >> > It seems that the resume feature in trunk has some problems.
> > >> >
> > >> >
> > >> > When I try to resume a workflow I am running, I get the following
> > >> > error:
> > >> >
> > >> >
> > >> > $ swift -sites.file sites.gordon.xml -tc.file apps -config cf
> > >> > workflow.swift -resume workflow-20131004-0107-09cxqmd5.0.rlog
> > >> > Swift trunk swift-r7089 cog-r3775 (cog modified locally)
> > >> > RunID: 20131004-0142-7l1ym0y9
> > >> > Progress: time: Fri, 04 Oct 2013 01:42:37 +0000
> > >> >
> > >> >
> > >> > Execution failed:
> > >> > java.lang.IndexOutOfBoundsException: Invalid index [14] for mA_file
> > >> > swift:stageIn @ workflow, line: 347
> > >> > Caused by: java.lang.IndexOutOfBoundsException: Invalid index [14]
> for
> > >> > mA_file
> > >> > at
> > >> >
> > >>
> org.griphyn.vdl.mapping.AbstractDataNode.checkNoValue(AbstractDataNode.java:716)
> > >> > at
> > >> >
> > >>
> org.griphyn.vdl.mapping.AbstractDataNode.waitFor(AbstractDataNode.java:682)
> > >> > at org.griphyn.vdl.karajan.lib.Stagein.function(Stagein.java:81)
> > >> > at
> > >> >
> > >>
> org.griphyn.vdl.karajan.lib.SwiftFunction.runBody(SwiftFunction.java:108)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.InternalFunction.run(InternalFunction.java:155)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:66)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > >> > at
> > >> >
> org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.user.Function.runBody(Function.java:99)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.runBody(InvocationWrapper.java:245)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:69)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > >> > at
> > >> >
> org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
> > >> > at
> > >> >
> > >>
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > >> > at org.globus.cog.karajan.compiled.nodes.UParallel
> > >> > $1.run(UParallel.java:68)
> > >> > at k.thr.LWThread.run(LWThread.java:228)
> > >> > at
> > >> >
> > >>
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> > >> > at java.util.concurrent.ThreadPoolExecutor
> > >> > $Worker.run(ThreadPoolExecutor.java:615)
> > >> > at java.lang.Thread.run(Thread.java:724)
> > >> >
> > >> >
> > >> > I am trying to reproduce with a simpler example.
> > >> >
> > >> >
> > >> > Thanks,
> > >> > --
> > >> > Ketan
> > >> >
> > >> >
> > >> > _______________________________________________
> > >> > Swift-devel mailing list
> > >> > Swift-devel at ci.uchicago.edu
> > >> > https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel
> > >>
> > >>
> > >>
> > >
> > >
> > > --
> > > Ketan
> > >
> > >
> >
> >
> > Attached the dummy apps now.
> >
> >
> > On Sat, Oct 5, 2013 at 6:40 PM, Ketan Maheshwari
> > <ketancmaheshwari at gmail.com> wrote:
> > Hi Mihael,
> >
> >
> > Attached is the simplified version of my script and apps which
> > has the same resume behavior I reported.
> >
> >
> > Thanks,
> > Ketan
> >
> >
> > On Thu, Oct 3, 2013 at 9:52 PM, Mihael Hategan
> > <hategan at mcs.anl.gov> wrote:
> > Yeah, please send me the script or a simplified one. I
> > have been using
> > resume for a while, so it's not a general resume
> > issue.
> >
> > Mihael
> >
> > On Thu, 2013-10-03 at 20:45 -0500, Ketan Maheshwari
> > wrote:
> > > Hi,
> > >
> > > It seems that the resume feature in trunk has some
> > problems.
> > >
> > > When I try to resume a workflow I am running, I get
> > the following error:
> > >
> > > $ swift -sites.file sites.gordon.xml -tc.file apps
> > -config cf
> > > workflow.swift -resume
> > workflow-20131004-0107-09cxqmd5.0.rlog
> > > Swift trunk swift-r7089 cog-r3775 (cog modified
> > locally)
> > > RunID: 20131004-0142-7l1ym0y9
> > > Progress: time: Fri, 04 Oct 2013 01:42:37 +0000
> > >
> > > Execution failed:
> > > java.lang.IndexOutOfBoundsException: Invalid index
> > [14] for mA_file
> > > swift:stageIn @ workflow, line: 347
> > > Caused by: java.lang.IndexOutOfBoundsException:
> > Invalid index [14] for
> > > mA_file
> > > at
> > >
> >
> org.griphyn.vdl.mapping.AbstractDataNode.checkNoValue(AbstractDataNode.java:716)
> > > at
> > >
> >
> org.griphyn.vdl.mapping.AbstractDataNode.waitFor(AbstractDataNode.java:682)
> > > at
> >
> org.griphyn.vdl.karajan.lib.Stagein.function(Stagein.java:81)
> > > at
> >
> org.griphyn.vdl.karajan.lib.SwiftFunction.runBody(SwiftFunction.java:108)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.InternalFunction.run(InternalFunction.java:155)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:66)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > > at
> >
> org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.user.Function.runBody(Function.java:99)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.runBody(InvocationWrapper.java:245)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:69)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > > at
> >
> org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > > at org.globus.cog.karajan.compiled.nodes.UParallel
> > $1.run(UParallel.java:68)
> > > at k.thr.LWThread.run(LWThread.java:228)
> > > at
> > >
> >
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> > > at
> > > java.util.concurrent.ThreadPoolExecutor
> > $Worker.run(ThreadPoolExecutor.java:615)
> > > at java.lang.Thread.run(Thread.java:724)
> > >
> > > I am trying to reproduce with a simpler example.
> > >
> > > Thanks,
> > > Hi,
> > >
> > >
> > > It seems that the resume feature in trunk has some
> > problems.
> > >
> > >
> > > When I try to resume a workflow I am running, I get
> > the following
> > > error:
> > >
> > >
> > > $ swift -sites.file sites.gordon.xml -tc.file apps
> > -config cf
> > > workflow.swift -resume
> > workflow-20131004-0107-09cxqmd5.0.rlog
> > > Swift trunk swift-r7089 cog-r3775 (cog modified
> > locally)
> > > RunID: 20131004-0142-7l1ym0y9
> > > Progress: time: Fri, 04 Oct 2013 01:42:37 +0000
> > >
> > >
> > > Execution failed:
> > > java.lang.IndexOutOfBoundsException: Invalid index
> > [14] for mA_file
> > > swift:stageIn @ workflow, line: 347
> > > Caused by: java.lang.IndexOutOfBoundsException:
> > Invalid index [14] for
> > > mA_file
> > > at
> > >
> >
> org.griphyn.vdl.mapping.AbstractDataNode.checkNoValue(AbstractDataNode.java:716)
> > > at
> > >
> >
> org.griphyn.vdl.mapping.AbstractDataNode.waitFor(AbstractDataNode.java:682)
> > > at
> >
> org.griphyn.vdl.karajan.lib.Stagein.function(Stagein.java:81)
> > > at
> > >
> >
> org.griphyn.vdl.karajan.lib.SwiftFunction.runBody(SwiftFunction.java:108)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.InternalFunction.run(InternalFunction.java:155)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:66)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.user.Function.runBody(Function.java:99)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.runBody(InvocationWrapper.java:245)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:69)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
> > > at
> > >
> >
> org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
> > > at org.globus.cog.karajan.compiled.nodes.UParallel
> > > $1.run(UParallel.java:68)
> > > at k.thr.LWThread.run(LWThread.java:228)
> > > at
> > >
> >
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> > > at java.util.concurrent.ThreadPoolExecutor
> > > $Worker.run(ThreadPoolExecutor.java:615)
> > > at java.lang.Thread.run(Thread.java:724)
> > >
> > >
> > > I am trying to reproduce with a simpler example.
> > >
> > >
> > > Thanks,
> > > --
> > > Ketan
> > >
> > >
> >
> > > _______________________________________________
> > > Swift-devel mailing list
> > > Swift-devel at ci.uchicago.edu
> > >
> >
> https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel
> >
> >
> >
> >
> >
> >
> > --
> > Ketan
> >
> >
> >
> >
> >
> >
> > --
> > Ketan
> >
> >
>
>
>
--
Ketan
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