[Swift-devel] MODIS freezes on Midway

[David Kelly]

Yadu, 

The setup.sh script sets this environment variable: 

export SBATCH_RESERVATION=osg 

I believe sbatch is picking up on this and trying to run with this reservation, which is likely expired. Can you try unsetting SBATCH_RESERVATION, commenting out that line in setup.sh and trying again? 

Thanks, 
David 

----- Original Message -----

> From: "Yadu Nand" <yadudoc1729 at gmail.com>
> To: "swift-devel" <swift-devel at ci.uchicago.edu>
> Sent: Tuesday, March 19, 2013 5:35:41 PM
> Subject: [Swift-devel] MODIS freezes on Midway

> Hi,

> I've been running the modis tests on Midway, from the demo that mike
> had shared:

> /home/wilde/osgdemo/modis/svn/swiftdemo.v04.tgz

> In the logs(please see attachment) I see a fail message : " sbatch:
> error: Batch job
> submission failed: Requested reservation is i nvalid"

> The fact that no error messages are shown on stdout doesn't help,
> plus, swift just
> seems to hang forever. * Please help! *

> I see test.midway show no progress, with just the same status for
> about 20mins:

> Progress: time: Tue, 19 Mar 2013 20:21:18 +0000 Selecting site:35
> Submitted:65

> After this, I tried to kill by Ctrl+C and then I get a few error
> messages :

> Failed to shut down block: Block 0319-5807480-000000 (16x3540.000s)
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> Can only cancel an active task
> at
> org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:196)
> at
> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85)
> at
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69)
> at
> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:106)
> at
> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:95)
> at
> org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:46)
> at
> org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:332)
> at
> org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:312)
> at
> org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdownBlocks(BlockQueueProcessor.java:800)
> at
> org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdown(BlockQueueProcessor.java:789)
> at
> org.globus.cog.abstraction.coaster.service.job.manager.JobQueue.shutdown(JobQueue.java:119)
> at
> org.globus.cog.abstraction.coaster.service.CoasterService.shutdown(CoasterService.java:271)
> at
> org.globus.cog.abstraction.coaster.service.ServiceShutdownHandler.requestComplete(ServiceShutdownHandler.java:28)
> at
> org.globus.cog.karajan.workflow.service.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88)
> at
> org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleRequest(AbstractKarajanChannel.java:519)
> at
> org.globus.cog.karajan.workflow.service.channels.AbstractPipedChannel.actualSend(AbstractPipedChannel.java:86)
> at
> org.globus.cog.karajan.workflow.service.channels.AbstractPipedChannel$Sender.run(AbstractPipedChannel.java:115)
> /home/wilde/osgdemo/modis/svn/swiftdemo.v04.tgz

> --
> Yadu Nand B
> _______________________________________________
> Swift-devel mailing list
> Swift-devel at ci.uchicago.edu
> https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel
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