[Swift-devel] Urgent Friday evening problem ; -) :: vanilla R on Beagle

[Michael Wilde]

Lorenzo, I think the R in /home/wilde/R/beagle/R-2.13.1 ws indeed built with module gcc, and thus should run with "node packing" (ie multiple parallel copies per node).

Build notes are in /home/wilde/R/README

The build script used was: /home/wilde/R/releases/build.beagle
which does:

---
mod unload $(mod list | grep -i prg)
mod load gcc

echo Using compiler: $(mod list | grep gcc)
echo 'Checking that PrgEnv has been unloaded (should be blank!):' $(mod list | grep -i prg)

rm -rf $MYRBUILD/beagle/$REL
#mkdir -p $MYRBUILD/beagle/$REL

cd $MYRBUILD/beagle
tar zxf $MYRBUILD/$REL.tar.gz
cd $REL

# make clean
./configure --prefix=$MYRINSTALL/beagle/$REL # --enable-R-shlib
make
make install
---

- Mike

----- Original Message -----
> From: "Michael Wilde" <wilde at mcs.anl.gov>
> To: "Lorenzo Pesce" <lpesce at uchicago.edu>
> Cc: "swift-devel Devel" <swift-devel at ci.uchicago.edu>
> Sent: Friday, July 27, 2012 5:02:31 PM
> Subject: Re: [Swift-devel] Urgent Friday evening problem ; -) :: vanilla R on Beagle
> Hi Lorenzo, sorry, just saw your message. Try this R:
> 
> login1$ pwd
> /home/wilde/R/beagle/R-2.13.1
> login1$ ls
> COPYING INSTALL Makefile.fw NEWS ONEWS README VERSION config.site
> configure.ac etc/ m4/ share/ tests/
> ChangeLog Makeconf.in Makefile.in NEWS.pdf OONEWS SVN-REVISION bin/
> configure* doc/ lib64/ po/ src/ tools/
> login1$ bin/R
> 
> R version 2.13.1 (2011-07-08)
> Copyright (C) 2011 The R Foundation for Statistical Computing
> 
> - Mike
> 
> 
> ----- Original Message -----
> > From: "Lorenzo Pesce" <lpesce at uchicago.edu>
> > To: "Michael Wilde" <wilde at mcs.anl.gov>
> > Cc: "swift-devel Devel" <swift-devel at ci.uchicago.edu>
> > Sent: Friday, July 27, 2012 2:24:38 PM
> > Subject: Urgent Friday evening problem ;-) :: vanilla R on Beagle
> > Has any one a version of R that works on the compute nodes and can
> > be
> > packed?
> > If not, I will build one.
> >
> > I just convinced a user of beagle to move all her urgent analysis to
> > swift. Please :-)
> >
> >
> > Lorenzo
> 
> --
> Michael Wilde
> Computation Institute, University of Chicago
> Mathematics and Computer Science Division
> Argonne National Laboratory
> 
> _______________________________________________
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> Swift-devel at ci.uchicago.edu
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-- 
Michael Wilde
Computation Institute, University of Chicago
Mathematics and Computer Science Division
Argonne National Laboratory