[Swift-devel] Swift 0.93 exception on Fusion

[Tim Armstrong]

This looks like the same bug I encountered in 0.92.1:
https://bugzilla.mcs.anl.gov/swift/show_bug.cgi?id=569

This affects SwiftR so I'm trying to work out what my options are to resolve
it.  Is it possible to backport the fix to the 0.92 release?  I can do this
myself, or simply patch my own version of the source if you let me know the
svn revision.

I'm also not sure what the overall best approach for bundling Swift with
SwiftR is.  My current approach is to simply include the most recent stable
Swift release, but I seem to be missing out on relevant bugfixes from
trunk.  I'm looking in the near future to start distributed SwiftR more
widely as a downloadable R package so pushing out bugfixes may become more
of a pain.  Any thoughts on which version of Swift I should bundle with
SwiftR in order to maximise stability?

- Tim


On Wed, Aug 17, 2011 at 2:53 PM, David Kelly <davidk at ci.uchicago.edu> wrote:

> Thanks Mihael, that fixed it.
>
> David
>
> ----- Original Message -----
> > From: "Mihael Hategan" <hategan at mcs.anl.gov>
> > To: "David Kelly" <davidk at ci.uchicago.edu>
> > Cc: swift-devel at ci.uchicago.edu
> > Sent: Wednesday, August 17, 2011 2:47:38 PM
> > Subject: Re: [Swift-devel] Swift 0.93 exception on Fusion
> > Fixed in svn.
> >
> > On Wed, 2011-08-17 at 11:34 -0500, David Kelly wrote:
> > > Hello,
> > >
> > > When testing 0.93 on Fusion, Swift throws an exception. I am running
> > > with the catsn script. It runs, creates the output, but then gives
> > > this error when cleaning up:
> > >
> > > Final status: time: Wed, 17 Aug 2011 11:17:38 -0500 Finished
> > > successfully:10
> > > org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> > > Cannot submit job
> > >     at
> > >
> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:67)
> > >     at
> > >
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45)
> > >     at
> > >
> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:57)
> > >     at
> > >
> org.globus.cog.abstraction.coaster.service.job.manager.LocalQueueProcessor.run(LocalQueueProcessor.java:40)
> > > Caused by: java.lang.NullPointerException
> > >     at
> > >
> org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.makeName(PBSExecutor.java:304)
> > >     at
> > >
> org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor.writeScript(PBSExecutor.java:205)
> > >     at
> > >
> org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.buildCommandLine(AbstractExecutor.java:169)
> > >     at
> > >
> org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:89)
> > >     at
> > >
> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)
> > >     ... 3 more
> > >
> > > The config and log files are attached. They can also be found on
> > > fusion in ~davidk/temp. This is filed in bugzilla as bug #515.
> > >
> > > David
> > > _______________________________________________ Swift-devel mailing
> > > list Swift-devel at ci.uchicago.edu
> > > https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel
> _______________________________________________
> Swift-devel mailing list
> Swift-devel at ci.uchicago.edu
> https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/swift-devel/attachments/20110920/213d5d49/attachment.html>