[Swift-devel] error in Swift

[Jonathan Monette]

Hello,
   I found an error when Swift creates the command line script it uses to execute.  Here is the script:

#!/bin/bash
"/home/jonmon/Library/Montage/bin/mProject" "[-X, raw_dir/raw_image_4.fits, proj_dir/proj_raw_image_4.fits, header.hdr]" 1>"stdout.txt" 2>"stderr.txt"


That script was generated by Swift.  The "[", "]", and "," are not supposed to be there.  

Here is the config file and sites file:
execution.retries=0
sitedir.keep=true
status.mode=provider
wrapper.log.always.transfer=true
foreach.maxthreads=1024
wrapper.parameter.mode=files
use.provider.staging=true
provider.staging.pin.swiftfiles=false

<config>
<pool handle="localhost">
   <execution provider="local" />
   <filesystem provider="local" />
   <workdirectory>/gpfs/pads/swift/jonmon/Swift/work/localhost</workdirectory>
 
   <profile namespace="karajan" key="jobThrottle">.05</profile>
 
   <profile namespace="env" key="SWIFT_GEN_SCRIPTS">KEEP</profile>
 </pool>
 <pool handle="pads">
     <execution provider="coaster" jobmanager="ssh:pbs" url="login.pads.ci.uchicago.edu" />
     <filesystem provider="local" />
     <profile namespace="globus" key="project">CI-CCR000013</profile>
     <workdirectory>/gpfs/pads/swift/jonmon/Swift/work/pads</workdirectory>
 
     <profile namespace="globus" key="maxtime">3600</profile>
     <profile namespace="globus" key="jobsPerNode">1</profile>
     <profile namespace="globus" key="slots">500</profile>
     <profile namespace="globus" key="nodeGranularity">1</profile>
     <profile namespace="globus" key="maxNodes">1</profile>
     <profile namespace="globus" key="queue">fast</profile>
 
     <profile namespace="karajan" key="jobThrottle">5</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
 
     <profile namespace="env" key="SWIFT_GEN_SCRIPTS">KEEP</profile>
 </pool>
</config>

attached is the log file.  The error that was reported came from the app call.  It said the wrong usage because the command line had those extra symbols in them.  I have a feeling it has something to do with the last two lines in the config file but I am basing that completely on the fact that if I remove those two line the scripts run to completion.
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