[Swift-devel] Re: catsn on beagle
ketan
ketancmaheshwari at gmail.com
Sat Jun 4 12:24:00 CDT 2011
can you try running the commandline by copying from run.sh and pasting
it at the prompt.
On 6/4/11 12:18 PM, Jonathan S Monette wrote:
> I do have that project. I did projects --avail and got back
>
> Project PI Title
> ------------------------------------------------------------------------------
> CI-CCR000013 Michael Wilde The Swift Parallel Scripting System
>
> Here is my run.sh file. I execute with ./run.sh after I did chmod +x
> run.sh
>
> #!/bin/bash
> swift -config cf -tc.file tc -sites.file beagle-coaster.xml
> catsn.swift -n=1
>
> I do have sh and cat in my path. I can execute them. Here is what
> which sh and which cat produced.
>
> sh is /usr/bin/sh
> cat is /bin/cat
>
> On Sat, Jun 4, 2011 at 12:10 PM, ketan <ketancmaheshwari at gmail.com
> <mailto:ketancmaheshwari at gmail.com>> wrote:
>
> Can you try "projects --avail" command on beagle to see if you are
> member of a project.
>
> Else you will need to request membership. You can do this from
> this page:
>
> http://pads.ci.uchicago.edu/access/
>
> In any case, your error does not seem to be because of the above.
> Looks like '(' has sneaked in because of some unexpected typo in
> commandline .. can you doublecheck it.
>
> Also can you make sure that you have all the files: tc,
> beagle-coasters.xml cf in PATH, ie. are you able to access them
> w/o ./
>
>
> On 6/4/11 12:03 PM, Jonathan S Monette wrote:
>> I did change the work directory. I however did not change the
>> project name. I do not know my project name so I kept the same
>> project that was in there. Here is my modified beagle-coasters.xml
>>
>> <config>
>> <pool handle="pbs">
>> <execution provider="coaster" jobmanager="local:pbs"/>
>> <profile namespace="globus" key="project">CI-CCR000013</profile>
>>
>> <profile namespace="globus" key="ppn">24:cray:pack</profile>
>>
>> <profile namespace="globus" key="workersPerNode">24</profile>
>> <profile namespace="globus" key="maxTime">1000</profile>
>> <profile namespace="globus" key="slots">1</profile>
>> <profile namespace="globus" key="nodeGranularity">1</profile>
>> <profile namespace="globus" key="maxNodes">1</profile>
>>
>> <profile namespace="karajan" key="jobThrottle">.63</profile>
>> <profile namespace="karajan" key="initialScore">10000</profile>
>>
>> <filesystem provider="local"/>
>> <workdirectory >/lustre/beagle/jonmon/Swift/work</workdirectory>
>> </pool>
>> </config>
>>
>>
>> On Sat, Jun 4, 2011 at 12:00 PM, Ketan Maheshwari
>> <ketancmaheshwari at gmail.com <mailto:ketancmaheshwari at gmail.com>>
>> wrote:
>>
>> Jon,
>>
>> Thanks for trying out catsn on Beagle.
>>
>> I just tried it myself but could not reproduce the error you
>> are getting. Have you made the changes that are mentioned in
>> the README:
>> ==
>> Change workdir location in beagle-coaster.xml
>> Change the project entry in the beagle-coaster.xml to your
>> project name
>> ==
>>
>> Ketan
>>
>>
>> On Sat, Jun 4, 2011 at 11:50 AM, Jonathan S Monette
>> <jonmon at utexas.edu <mailto:jonmon at utexas.edu>> wrote:
>>
>> Hello,
>> I am trying to run the catsn test on beagle using the
>> files in ~ketan/catsn. I have copied over this directory
>> over to my home directory and I believe I set it up
>> correctly. I did module load swift and the ran run.sh
>> that was in this directory. I get this error.
>>
>> /soft/swift/0.92/bin/swift: eval: line 152: syntax error
>> near unexpected token `('
>> /soft/swift/0.92/bin/swift: eval: line 152: `java
>> -Xmx8192M
>> -Djava.endorsed.dirs=/soft/swift/0.92/bin/../lib/endorsed
>> -DUID=1881
>> -DGLOBUS_HOSTNAME=login2.beagle.ci.uchicago.edu.(none)
>> -DCOG_INSTALL_PATH=/soft/swift/0.92/bin/..
>> -Dswift.home=/soft/swift/0.92/bin/..
>> -Djava.security.egd=file:///dev/urandom -classpath
>> /soft/swift/0.92/bin/../etc:/soft/swift/0.92/bin/../libexec:/soft/swift/0.92/bin/../lib/addressing-1.0.jar:/soft/swift/0.92/bin/../lib/ant.jar:/soft/swift/0.92/bin/../lib/antlr-2.7.5.jar:/soft/swift/0.92/bin/../lib/axis.jar:/soft/swift/0.92/bin/../lib/axis-url.jar:/soft/swift/0.92/bin/../lib/backport-util-concurrent.jar:/soft/swift/0.92/bin/../lib/castor-0.9.6.jar:/soft/swift/0.92/bin/../lib/coaster-bootstrap.jar:/soft/swift/0.92/bin/../lib/cog-abstraction-common-2.4.jar:/soft/swift/0.92/bin/../lib/cog-axis.jar:/soft/swift/0.92/bin/../lib/cog-grapheditor-0.47.jar:/soft/swift/0.92/bin/../lib/cog-jglobus-1.7.0.jar:/soft/swift/0.92/bin/../lib/cog-karajan-0.36-dev.jar:/soft/swift/0.92/bin/../lib/cog-provider-clref-gt4_0_0.jar:/soft/swift/0.92/bin/../lib/cog-provider-coaster-0.3.jar:/soft/swift/0.92/bin/../lib/cog-provider-dcache-0.1.jar:/soft/swift/0.92/bin/../lib/cog-provider-gt2-2.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-gt4_0_0-2.5.jar:/soft/swift/0.92/bin/../lib/cog-pro
>> vider-local-2.2.jar:/soft/swift/0.92/bin/../lib/cog-provider-localscheduler-0.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-ssh-2.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-webdav-2.1.jar:/soft/swift/0.92/bin/../lib/cog-resources-1.0.jar:/soft/swift/0.92/bin/../lib/cog-swift-svn.jar:/soft/swift/0.92/bin/../lib/cog-trap-1.0.jar:/soft/swift/0.92/bin/../lib/cog-url.jar:/soft/swift/0.92/bin/../lib/cog-util-0.92.jar:/soft/swift/0.92/bin/../lib/commonj.jar:/soft/swift/0.92/bin/../lib/commons-beanutils.jar:/soft/swift/0.92/bin/../lib/commons-collections-3.0.jar:/soft/swift/0.92/bin/../lib/commons-digester.jar:/soft/swift/0.92/bin/../lib/commons-discovery.jar:/soft/swift/0.92/bin/../lib/commons-httpclient.jar:/soft/swift/0.92/bin/../lib/commons-logging-1.1.jar:/soft/swift/0.92/bin/../lib/concurrent.jar:/soft/swift/0.92/bin/../lib/cryptix32.jar:/soft/swift/0.92/bin/../lib/cryptix-asn1.jar:/soft/swift/0.92/bin/../lib/cryptix.jar:/soft/swift/0.92/bin/../lib/globus_delegation_servic
>> e.jar:/soft/swift/0.92/bin/../lib/globus_delegation_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_mds_aggregator_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rendezvous_service.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rendezvous_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rft_stubs.jar:/soft/swift/0.92/bin/../lib/gram-client.jar:/soft/swift/0.92/bin/../lib/gram-stubs.jar:/soft/swift/0.92/bin/../lib/gram-utils.jar:/soft/swift/0.92/bin/../lib/j2ssh-common-0.2.2.jar:/soft/swift/0.92/bin/../lib/j2ssh-core-0.2.2-patch-b.jar:/soft/swift/0.92/bin/../lib/jakarta-regexp-1.2.jar:/soft/swift/0.92/bin/../lib/jakarta-slide-webdavlib-2.0.jar:/soft/swift/0.92/bin/../lib/jaxrpc.jar:/soft/swift/0.92/bin/../lib/jce-jdk13-131.jar:/soft/swift/0.92/bin/../lib/jgss.jar:/soft/swift/0.92/bin/../lib/jline-0.9.94.jar:/soft/swift/0.92/bin/../lib/jsr173_1.0_api.jar:/soft/swift/0.92/bin/../lib/jug-lgpl-2.0.0.jar:/soft/swift/0.92/bin/../lib/junit.jar:/soft/swift/0.92/bin/../lib/log4j-1.2
>> .8.jar:/soft/swift/0.92/bin/../lib/naming-common.jar:/soft/swift/0.92/bin/../lib/naming-factory.jar:/soft/swift/0.92/bin/../lib/naming-java.jar:/soft/swift/0.92/bin/../lib/naming-resources.jar:/soft/swift/0.92/bin/../lib/opensaml.jar:/soft/swift/0.92/bin/../lib/puretls.jar:/soft/swift/0.92/bin/../lib/resolver.jar:/soft/swift/0.92/bin/../lib/saaj.jar:/soft/swift/0.92/bin/../lib/stringtemplate.jar:/soft/swift/0.92/bin/../lib/vdldefinitions.jar:/soft/swift/0.92/bin/../lib/wsdl4j.jar:/soft/swift/0.92/bin/../lib/wsrf_core.jar:/soft/swift/0.92/bin/../lib/wsrf_core_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_mds_index_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_mds_usefulrp_schema_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_provider_jce.jar:/soft/swift/0.92/bin/../lib/wsrf_tools.jar:/soft/swift/0.92/bin/../lib/wss4j.jar:/soft/swift/0.92/bin/../lib/xalan.jar:/soft/swift/0.92/bin/../lib/xbean.jar:/soft/swift/0.92/bin/../lib/xbean_xpath.jar:/soft/swift/0.92/bin/../lib/xercesImpl.jar:/soft
>> /swift/0.92/bin/../lib/xml-apis.jar:/soft/swift/0.92/bin/../lib/xmlsec.jar:/soft/swift/0.92/bin/../lib/xpp3-1.1.3.4d_b4_min.jar:/soft/swift/0.92/bin/../lib/xstream-1.1.1-patched.jar:
>> org.griphyn.vdl.karajan.Loader '-config' 'cf' '-tc.file'
>> 'tc' '-sites.file' 'beagle-coaster.xml' 'catsn.swift' '-n=1''
>>
>> I there something else I need to load on beagle to make
>> swift run accordingly?
>>
>> --
>>
>> Any intelligent fool can make things bigger and more
>> complex... It takes a touch of genius - and a lot of
>> courage to move in the opposite direction.
>>
>> - Albert Einstein
>>
>>
>>
>>
>>
>>
>> --
>>
>> Any intelligent fool can make things bigger and more complex...
>> It takes a touch of genius - and a lot of courage to move in the
>> opposite direction.
>>
>> - Albert Einstein
>>
>>
>
>
>
> --
>
> Any intelligent fool can make things bigger and more complex... It
> takes a touch of genius - and a lot of courage to move in the opposite
> direction.
>
> - Albert Einstein
>
>
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