[Swift-devel] Re: catsn on beagle

Sat Jun 4 12:10:38 CDT 2011

Can you try "projects --avail" command on beagle to see if you are 
member of a project.

Else you will need to request membership. You can do this from this page:

http://pads.ci.uchicago.edu/access/

In any case, your error does not seem to be because of the above. Looks 
like '(' has sneaked in because of some unexpected typo in commandline 
.. can you doublecheck it.

Also can you make sure that you have all the files: tc, 
beagle-coasters.xml cf in PATH, ie. are you able to access them w/o ./

On 6/4/11 12:03 PM, Jonathan S Monette wrote:
> I did change the work directory.  I however did not change the project 
> name.  I do not know my project name so I kept the same project that 
> was in there.  Here is my modified beagle-coasters.xml
>
> <config>
> <pool handle="pbs">
> <execution provider="coaster" jobmanager="local:pbs"/>
> <profile namespace="globus" key="project">CI-CCR000013</profile>
>
> <profile namespace="globus" key="ppn">24:cray:pack</profile>
>
> <profile namespace="globus" key="workersPerNode">24</profile>
> <profile namespace="globus" key="maxTime">1000</profile>
> <profile namespace="globus" key="slots">1</profile>
> <profile namespace="globus" key="nodeGranularity">1</profile>
> <profile namespace="globus" key="maxNodes">1</profile>
>
> <profile namespace="karajan" key="jobThrottle">.63</profile>
> <profile namespace="karajan" key="initialScore">10000</profile>
>
> <filesystem provider="local"/>
> <workdirectory >/lustre/beagle/jonmon/Swift/work</workdirectory>
> </pool>
> </config>
>
>
> On Sat, Jun 4, 2011 at 12:00 PM, Ketan Maheshwari 
> <ketancmaheshwari at gmail.com <mailto:ketancmaheshwari at gmail.com>> wrote:
>
>     Jon,
>
>     Thanks for trying out catsn on Beagle.
>
>     I just tried it myself but could not reproduce the error you are
>     getting. Have you made the changes that are mentioned in the README:
>     ==
>     Change workdir location in beagle-coaster.xml
>     Change the project entry in the beagle-coaster.xml to your project
>     name
>     ==
>
>     Ketan
>
>
>     On Sat, Jun 4, 2011 at 11:50 AM, Jonathan S Monette
>     <jonmon at utexas.edu <mailto:jonmon at utexas.edu>> wrote:
>
>         Hello,
>            I am trying to run the catsn test on beagle using the files
>         in ~ketan/catsn.  I have copied over this directory over to my
>         home directory and I believe I set it up correctly.  I did
>         module load swift and the ran run.sh that was in this
>         directory.  I get this error.
>
>         /soft/swift/0.92/bin/swift: eval: line 152: syntax error near
>         unexpected token `('
>         /soft/swift/0.92/bin/swift: eval: line 152: `java -Xmx8192M
>         -Djava.endorsed.dirs=/soft/swift/0.92/bin/../lib/endorsed
>         -DUID=1881
>         -DGLOBUS_HOSTNAME=login2.beagle.ci.uchicago.edu.(none)
>         -DCOG_INSTALL_PATH=/soft/swift/0.92/bin/..
>         -Dswift.home=/soft/swift/0.92/bin/..
>         -Djava.security.egd=file:///dev/urandom -classpath
>         /soft/swift/0.92/bin/../etc:/soft/swift/0.92/bin/../libexec:/soft/swift/0.92/bin/../lib/addressing-1.0.jar:/soft/swift/0.92/bin/../lib/ant.jar:/soft/swift/0.92/bin/../lib/antlr-2.7.5.jar:/soft/swift/0.92/bin/../lib/axis.jar:/soft/swift/0.92/bin/../lib/axis-url.jar:/soft/swift/0.92/bin/../lib/backport-util-concurrent.jar:/soft/swift/0.92/bin/../lib/castor-0.9.6.jar:/soft/swift/0.92/bin/../lib/coaster-bootstrap.jar:/soft/swift/0.92/bin/../lib/cog-abstraction-common-2.4.jar:/soft/swift/0.92/bin/../lib/cog-axis.jar:/soft/swift/0.92/bin/../lib/cog-grapheditor-0.47.jar:/soft/swift/0.92/bin/../lib/cog-jglobus-1.7.0.jar:/soft/swift/0.92/bin/../lib/cog-karajan-0.36-dev.jar:/soft/swift/0.92/bin/../lib/cog-provider-clref-gt4_0_0.jar:/soft/swift/0.92/bin/../lib/cog-provider-coaster-0.3.jar:/soft/swift/0.92/bin/../lib/cog-provider-dcache-0.1.jar:/soft/swift/0.92/bin/../lib/cog-provider-gt2-2.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-gt4_0_0-2.5.jar:/soft/swift/0.92/bin/../lib/cog-provider-local-2.2.jar:/soft/swift/0.92/bin/../lib/cog-provider-localscheduler-0.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-ssh-2.4.jar:/soft/swift/0.92/bin/../lib/cog-provider-webdav-2.1.jar:/soft/swift/0.92/bin/../lib/cog-resources-1.0.jar:/soft/swift/0.92/bin/../lib/cog-swift-svn.jar:/soft/swift/0.92/bin/../lib/cog-trap-1.0.jar:/soft/swift/0.92/bin/../lib/cog-url.jar:/soft/swift/0.92/bin/../lib/cog-util-0.92.jar:/soft/swift/0.92/bin/../lib/commonj.jar:/soft/swift/0.92/bin/../lib/commons-beanutils.jar:/soft/swift/0.92/bin/../lib/commons-collections-3.0.jar:/soft/swift/0.92/bin/../lib/commons-digester.jar:/soft/swift/0.92/bin/../lib/commons-discovery.jar:/soft/swift/0.92/bin/../lib/commons-httpclient.jar:/soft/swift/0.92/bin/../lib/commons-logging-1.1.jar:/soft/swift/0.92/bin/../lib/concurrent.jar:/soft/swift/0.92/bin/../lib/cryptix32.jar:/soft/swift/0.92/bin/../lib/cryptix-asn1.jar:/soft/swift/0.92/bin/../lib/cryptix.jar:/soft/swift/0.92/bin/../lib/globus_delegation_service.jar:/soft/swift/0.92/bin/../lib/globus_delegation_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_mds_aggregator_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rendezvous_service.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rendezvous_stubs.jar:/soft/swift/0.92/bin/../lib/globus_wsrf_rft_stubs.jar:/soft/swift/0.92/bin/../lib/gram-client.jar:/soft/swift/0.92/bin/../lib/gram-stubs.jar:/soft/swift/0.92/bin/../lib/gram-utils.jar:/soft/swift/0.92/bin/../lib/j2ssh-common-0.2.2.jar:/soft/swift/0.92/bin/../lib/j2ssh-core-0.2.2-patch-b.jar:/soft/swift/0.92/bin/../lib/jakarta-regexp-1.2.jar:/soft/swift/0.92/bin/../lib/jakarta-slide-webdavlib-2.0.jar:/soft/swift/0.92/bin/../lib/jaxrpc.jar:/soft/swift/0.92/bin/../lib/jce-jdk13-131.jar:/soft/swift/0.92/bin/../lib/jgss.jar:/soft/swift/0.92/bin/../lib/jline-0.9.94.jar:/soft/swift/0.92/bin/../lib/jsr173_1.0_api.jar:/soft/swift/0.92/bin/../lib/jug-lgpl-2.0.0.jar:/soft/swift/0.92/bin/../lib/junit.jar:/soft/swift/0.92/bin/../lib/log4j-1.2.8.jar:/soft/swift/0.92/bin/../lib/naming-common.jar:/soft/swift/0.92/bin/../lib/naming-factory.jar:/soft/swift/0.92/bin/../lib/naming-java.jar:/soft/swift/0.92/bin/../lib/naming-resources.jar:/soft/swift/0.92/bin/../lib/opensaml.jar:/soft/swift/0.92/bin/../lib/puretls.jar:/soft/swift/0.92/bin/../lib/resolver.jar:/soft/swift/0.92/bin/../lib/saaj.jar:/soft/swift/0.92/bin/../lib/stringtemplate.jar:/soft/swift/0.92/bin/../lib/vdldefinitions.jar:/soft/swift/0.92/bin/../lib/wsdl4j.jar:/soft/swift/0.92/bin/../lib/wsrf_core.jar:/soft/swift/0.92/bin/../lib/wsrf_core_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_mds_index_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_mds_usefulrp_schema_stubs.jar:/soft/swift/0.92/bin/../lib/wsrf_provider_jce.jar:/soft/swift/0.92/bin/../lib/wsrf_tools.jar:/soft/swift/0.92/bin/../lib/wss4j.jar:/soft/swift/0.92/bin/../lib/xalan.jar:/soft/swift/0.92/bin/../lib/xbean.jar:/soft/swift/0.92/bin/../lib/xbean_xpath.jar:/soft/swift/0.92/bin/../lib/xercesImpl.jar:/soft/swift/0.92/bin/../lib/xml-apis.jar:/soft/swift/0.92/bin/../lib/xmlsec.jar:/soft/swift/0.92/bin/../lib/xpp3-1.1.3.4d_b4_min.jar:/soft/swift/0.92/bin/../lib/xstream-1.1.1-patched.jar:
>         org.griphyn.vdl.karajan.Loader '-config' 'cf' '-tc.file' 'tc'
>         '-sites.file' 'beagle-coaster.xml' 'catsn.swift' '-n=1''
>
>         I there something else I need to load on beagle to make swift
>         run accordingly?
>
>         -- 
>
>         Any intelligent fool can make things bigger and more
>         complex... It takes a touch of genius - and a lot of courage
>         to move in the opposite direction.
>
>         - Albert Einstein
>
>
>
>
>
>
> -- 
>
> Any intelligent fool can make things bigger and more complex... It 
> takes a touch of genius - and a lot of courage to move in the opposite 
> direction.
>
> - Albert Einstein
>
>
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