[Swift-devel] Re: GLOBUS::count gives invalid RSL requests

[Allan Espinosa]

Ooops. nevermind.  I just missed specifying my queue that allows me
larger cpu counts.



2010/2/3 Allan Espinosa <aespinosa at cs.uchicago.edu>:
> Hi I was trying to use profile namespaces on tc.data
>
> RANGER  mpiblast
> /work/01035/tg802895/science/jgiblast/wrapper_mpiblast.sh INSTALLED
> INTEL32::LINUX
> GLOBUS::count="1024";GLOBUS::host_count="16";GLOBUS::maxwalltime="1:00:00";GLOBUS::job_type="single"
>
> and gives me these error message of generating an incorrect RSL script:
>  svn swift-r3202 cog-r2683
>
> RunID: testing_ranger
> Progress:
> Progress:  Selecting site:1  Stage in:2
> Progress:  Selecting site:1  Submitting:1  Submitted:1
> Progress:  Selecting site:1  Submitted:1  Active:1
> Failed to transfer wrapper log from mpiblastp-testing_ranger/info/h on RANGER
> Progress:  Selecting site:1  Failed:1 Failed but can retry:1
> Execution failed:
>        Exception in mpiblast:
> Arguments: [--replica-group-size, 32, --use-parallel-write,
> --partition-size, 257, --use-virtual-frags, -p, blastp, -m, 8, -e,
> 0.001, -F, F, -d, nr6_00/nr00, -i,
> /work/01035/tg802895/nr_andreas/reciprocal/reciprocal/nr00-0, -o,
> out/res_nr00-0.out]
> Host: RANGER
> Directory: mpiblastp-testing_ranger/jobs/h/mpiblast-hmbbm9nj
> stderr.txt:
>
> stdout.txt:
>
> ----
>
> Caused by:
>        The provided RSL 'count' value is invalid (not an integer or must be
> greater than 0)
>
>
> Putting this on <profile namespace="globus" key="count">1024</profile>
> works correctly in my workflow.
>
> thanks,
> -allan
>