[Swift-devel] GLOBUS::count gives invalid RSL requests

[Allan Espinosa]

Hi I was trying to use profile namespaces on tc.data

RANGER  mpiblast
/work/01035/tg802895/science/jgiblast/wrapper_mpiblast.sh INSTALLED
INTEL32::LINUX
GLOBUS::count="1024";GLOBUS::host_count="16";GLOBUS::maxwalltime="1:00:00";GLOBUS::job_type="single"

and gives me these error message of generating an incorrect RSL script:
 svn swift-r3202 cog-r2683

RunID: testing_ranger
Progress:
Progress:  Selecting site:1  Stage in:2
Progress:  Selecting site:1  Submitting:1  Submitted:1
Progress:  Selecting site:1  Submitted:1  Active:1
Failed to transfer wrapper log from mpiblastp-testing_ranger/info/h on RANGER
Progress:  Selecting site:1  Failed:1 Failed but can retry:1
Execution failed:
	Exception in mpiblast:
Arguments: [--replica-group-size, 32, --use-parallel-write,
--partition-size, 257, --use-virtual-frags, -p, blastp, -m, 8, -e,
0.001, -F, F, -d, nr6_00/nr00, -i,
/work/01035/tg802895/nr_andreas/reciprocal/reciprocal/nr00-0, -o,
out/res_nr00-0.out]
Host: RANGER
Directory: mpiblastp-testing_ranger/jobs/h/mpiblast-hmbbm9nj
stderr.txt:

stdout.txt:

----

Caused by:
	The provided RSL 'count' value is invalid (not an integer or must be
greater than 0)


Putting this on <profile namespace="globus" key="count">1024</profile>
works correctly in my workflow.

thanks,
-allan

-- 
Allan M. Espinosa <http://amespinosa.wordpress.com>
PhD student, Computer Science
University of Chicago <http://people.cs.uchicago.edu/~aespinosa>