[Swift-devel] coaster one-liner bootstrap script

[Michael Wilde]

I forgot to add: there was no gram or coaster log on the target site, 
teraport, under ~osg, which is what my cert is mapped to. As far as I 
could tell, the job never made it to the site, or even to gram.

Is this message the result of a client-side check, before the botstrap 
job is launched?

- Mike


On 2/12/09 1:05 AM, Michael Wilde wrote:
> I updated cog and swift to the latest, and tried on teraport.
> 
> sites.xml was:
> 
> <config>
> <pool handle="teraport" >
>   <profile namespace="globus" key="queue">fast</profile>
>   <profile namespace="globus" 
> key="coasterWorkerMaxwalltime">00:05:00</profile>
>   <gridftp url="gsiftp://tp-grid1.ci.uchicago.edu" />
>   <execution provider="coaster" url="tp-grid1.ci.uchicago.edu" 
> jobmanager="gt2:gt2:pbs" />
>   <workdirectory>/gpfs1/osg/data/oops/swiftwork</workdirectory>
> </pool>
> 
> </config>
> 
> 
> I got: coaster-bootstrap.list not found in classpath
> 
> Output is below. I lost the log, but it didnt say much more than whats 
> below.
> 
> /home/wilde/swift/tools/swiftrun: Swift script oops7.swift starting at 
> Wed Feb 11 22:50:33 CST 2009
> running on sites: teraport.coaster.gt2.osg
> 
> Swift svn swift-r2527 cog-r2297
> 
> RunID: 20090211-2250-gkzsaa90
> Progress:
> Progress:  Stage in:1 Initializing site shared directory:1
> Progress:  Stage in:1 Submitting:1
> Warning: missing walltime specification for "runoops". Assuming 10 minutes.
> Failed to transfer wrapper log from oops7-20090211-2250-gkzsaa90/info/7 
> on teraport
> Execution failed:
>         Failed to transfer wrapper log from 
> oops7-20090211-2250-gkzsaa90/info/8 on teraport
> Exception in runoops:
> Arguments: [input/fasta/T1af7.fasta, input/secseq/T1af7.secseq, 
> input/native/T1af7.pdb, output/T1af7.0.pdt, output/T1af7.0.rmsd, 0, TEMP 
> UPDATE INTERVAL = 10, SMOOTH DEVIATION COEFFICIENT = 0.80001]
> Host: teraport
> Directory: oops7-20090211-2250-gkzsaa90/jobs/7/runoops-7aj2uh6j
> stderr.txt:
> 
> stdout.txt:
> 
> ----
> 
> Caused by:
>         Could not submit job
> Caused by:
>         Could not start coaster service
> Caused by:
>         java.lang.RuntimeException: coaster-bootstrap.list not found in 
> classpath
> Cleaning up...
>  Done
> 
> /home/wilde/swift/tools/swiftrun: Swift Script oops7.swift ended at Wed 
> Feb 11 22:50:40 CST 2009 with exit code 0
> com$
> 
> 
> On 2/11/09 8:02 PM, Mihael Hategan wrote:
>> cog r2297 contains a patch to transform the bootstrap script to a 
>> one-liner (thanks to Mike for the tips).
>>
>> I did a sanity test on localhost.
>> _______________________________________________
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