[Swift-devel] coaster one-liner bootstrap script

[Michael Wilde]

I updated cog and swift to the latest, and tried on teraport.

sites.xml was:

<config>
<pool handle="teraport" >
   <profile namespace="globus" key="queue">fast</profile>
   <profile namespace="globus" 
key="coasterWorkerMaxwalltime">00:05:00</profile>
   <gridftp url="gsiftp://tp-grid1.ci.uchicago.edu" />
   <execution provider="coaster" url="tp-grid1.ci.uchicago.edu" 
jobmanager="gt2:gt2:pbs" />
   <workdirectory>/gpfs1/osg/data/oops/swiftwork</workdirectory>
</pool>

</config>


I got: coaster-bootstrap.list not found in classpath

Output is below. I lost the log, but it didnt say much more than whats 
below.

/home/wilde/swift/tools/swiftrun: Swift script oops7.swift starting at 
Wed Feb 11 22:50:33 CST 2009
running on sites: teraport.coaster.gt2.osg

Swift svn swift-r2527 cog-r2297

RunID: 20090211-2250-gkzsaa90
Progress:
Progress:  Stage in:1 Initializing site shared directory:1
Progress:  Stage in:1 Submitting:1
Warning: missing walltime specification for "runoops". Assuming 10 minutes.
Failed to transfer wrapper log from oops7-20090211-2250-gkzsaa90/info/7 
on teraport
Execution failed:
         Failed to transfer wrapper log from 
oops7-20090211-2250-gkzsaa90/info/8 on teraport
Exception in runoops:
Arguments: [input/fasta/T1af7.fasta, input/secseq/T1af7.secseq, 
input/native/T1af7.pdb, output/T1af7.0.pdt, output/T1af7.0.rmsd, 0, TEMP 
UPDATE INTERVAL = 10, SMOOTH DEVIATION COEFFICIENT = 0.80001]
Host: teraport
Directory: oops7-20090211-2250-gkzsaa90/jobs/7/runoops-7aj2uh6j
stderr.txt:

stdout.txt:

----

Caused by:
         Could not submit job
Caused by:
         Could not start coaster service
Caused by:
         java.lang.RuntimeException: coaster-bootstrap.list not found in 
classpath
Cleaning up...
  Done

/home/wilde/swift/tools/swiftrun: Swift Script oops7.swift ended at Wed 
Feb 11 22:50:40 CST 2009 with exit code 0
com$


On 2/11/09 8:02 PM, Mihael Hategan wrote:
> cog r2297 contains a patch to transform the bootstrap script 
> to a one-liner (thanks to Mike for the tips).
> 
> I did a sanity test on localhost.
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