[Swift-devel] [CI Ticketing System #565] swift not working

[Ti Leggett]

If you were submitting this to gwynn for the HNL condor pool, globus had been
broken on gwynn. Globus has been fixed, so can you try this again and let us
know if this problem is fixed as well.

On Tue Apr 21 10:05:00 2009, andric at uchicago.edu wrote:
> Normally, I would hit up Sarah for a fix on this, but since she's on
> vacation I'm hoping someone else out there could help with this. I'm unable
> to get swift jobs submitted. I've tried submitting to both the ucanl64 and
> bsd clusters. The run dir (with log files) is here:
> /disks/ci-gpfs/fmri/cnari/swift/projects/andric/SNR/RFL2
>
>
> Here's what I get from ucanl:
>
> [...]Progress: Submitting:1 Submitted:1 Failed but can retry:1
> Failed to transfer wrapper log from AFNIsnr-20090421-0930-q403bn99/info/e on
> ANLUCTERAGRID64
> Progress: Submitting:1 Failed but can retry:2
> Progress: Submitting:1 Failed but can retry:2
> Progress: Submitting:1 Failed but can retry:2
> Progress: Stage in:1 Submitting:1 Failed but can retry:1
> Progress: Submitting:2 Failed but can retry:1
> Progress: Submitting:1 Submitted:1 Failed but can retry:1
> Failed to transfer wrapper log from AFNIsnr-20090421-0930-q403bn99/info/g on
> ANLUCTERAGRID64
> Progress: Submitting:1 Failed:1 Failed but can retry:1
> Execution failed:
> Exception in AFNI_3dvolreg:
> Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run6_trim, -base,
> ts.6_trim+orig[92], -prefix, volreg.RFL2.run6_trim, ts.6_trim+orig.BRIK]
> Host: ANLUCTERAGRID64
> Directory: AFNIsnr-20090421-0930-q403bn99/jobs/g/AFNI_3dvolreg-gxefdp9j
> stderr.txt:
>
> stdout.txt:
>
> ----
>
> Caused by:
> Cannot submit job: ; nested exception is:
> java.net.SocketTimeoutException: Read timed out
> gwynn 5%
>
>
>
> and this is what I get on bsd:
>
> RunID: 20090421-0943-o1bb0081
> Progress:
> Progress: Selecting site:1 Initializing site shared directory:1 Stage
> in:1
> Progress: Stage in:2 Submitting:1
> 2009.04.21 09:44:04.848 CDT: [ERROR] Parsing profiles on line 1800 Illegal
> character ':'at position 60 :Illegal character ':'
> Progress: Submitted:1 Failed but can retry:2
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/f on
> BSD
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/g on
> BSD
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/e on
> BSD
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/i on
> BSD
> Progress: Failed but can retry:3
> Progress: Stage in:1 Failed but can retry:2
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/m on
> BSD
> Progress: Failed but can retry:3
> Progress: Failed but can retry:3
> Progress: Failed but can retry:3
> Progress: Stage in:1 Failed but can retry:2
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/o on
> BSD
> Progress: Failed but can retry:3
> Progress: Failed but can retry:3
> Progress: Failed but can retry:3
> Progress: Failed but can retry:3
> Progress: Stage in:1 Failed but can retry:2
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/q on
> BSD
> Progress: Failed:1 Failed but can retry:2
> Execution failed:
> Exception in AFNI_3dvolreg:
> Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run5_trim, -base,
> ts.5_trim+orig[92], -prefix, volreg.RFL2.run5_trim, ts.5_trim+orig.BRIK]
> Host: BSD
> Directory: AFNIsnr-20090421-0943-o1bb0081/jobs/q/AFNI_3dvolreg-q0rydp9j
> stderr.txt:
>
> stdout.txt:
>
> ----
>
> Caused by:
> Cannot submit job
> Caused by:
> Data transfer to the server failed [Caused by: Token length
> 1248813600 > 33554432]