[Swift-devel] swift not working

[Michael Andric]

Normally, I would hit up Sarah for a fix on this, but since she's on
vacation I'm hoping someone else out there could help with this.  I'm unable
to get swift jobs submitted.  I've tried submitting to both the ucanl64 and
bsd clusters.  The run dir (with log files) is here:
/disks/ci-gpfs/fmri/cnari/swift/projects/andric/SNR/RFL2


Here's what I get from ucanl:

[...]Progress:  Submitting:1  Submitted:1 Failed but can retry:1
Failed to transfer wrapper log from AFNIsnr-20090421-0930-q403bn99/info/e on
ANLUCTERAGRID64
Progress:  Submitting:1 Failed but can retry:2
Progress:  Submitting:1 Failed but can retry:2
Progress:  Submitting:1 Failed but can retry:2
Progress:  Stage in:1  Submitting:1 Failed but can retry:1
Progress:  Submitting:2 Failed but can retry:1
Progress:  Submitting:1  Submitted:1 Failed but can retry:1
Failed to transfer wrapper log from AFNIsnr-20090421-0930-q403bn99/info/g on
ANLUCTERAGRID64
Progress:  Submitting:1  Failed:1 Failed but can retry:1
Execution failed:
        Exception in AFNI_3dvolreg:
Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run6_trim, -base,
ts.6_trim+orig[92], -prefix, volreg.RFL2.run6_trim, ts.6_trim+orig.BRIK]
Host: ANLUCTERAGRID64
Directory: AFNIsnr-20090421-0930-q403bn99/jobs/g/AFNI_3dvolreg-gxefdp9j
stderr.txt:

stdout.txt:

----

Caused by:
        Cannot submit job: ; nested exception is:
        java.net.SocketTimeoutException: Read timed out
gwynn 5%



and this is what I get on bsd:

RunID: 20090421-0943-o1bb0081
Progress:
Progress:  Selecting site:1  Initializing site shared directory:1  Stage
in:1
Progress:  Stage in:2  Submitting:1
2009.04.21 09:44:04.848 CDT: [ERROR] Parsing profiles on line 1800 Illegal
character ':'at position 60 :Illegal character ':'
Progress:  Submitted:1 Failed but can retry:2
Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/f on
BSD
Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/g on
BSD
Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/e on
BSD
Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/i on
BSD
Progress: Failed but can retry:3
Progress:  Stage in:1 Failed but can retry:2
Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/m on
BSD
Progress: Failed but can retry:3
Progress: Failed but can retry:3
Progress: Failed but can retry:3
Progress:  Stage in:1 Failed but can retry:2
Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/o on
BSD
Progress: Failed but can retry:3
Progress: Failed but can retry:3
Progress: Failed but can retry:3
Progress: Failed but can retry:3
Progress:  Stage in:1 Failed but can retry:2
Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/q on
BSD
Progress:  Failed:1 Failed but can retry:2
Execution failed:
        Exception in AFNI_3dvolreg:
Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run5_trim, -base,
ts.5_trim+orig[92], -prefix, volreg.RFL2.run5_trim, ts.5_trim+orig.BRIK]
Host: BSD
Directory: AFNIsnr-20090421-0943-o1bb0081/jobs/q/AFNI_3dvolreg-q0rydp9j
stderr.txt:

stdout.txt:

----

Caused by:
        Cannot submit job
Caused by:
        Data transfer to the server failed [Caused by: Token length
1248813600 > 33554432]
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