[Swift-devel] coaster problem with jobmanager=gt2:pbs

[Mihael Hategan]

Yes. This is one of those "can't find executable unless run through
'bash -l' or maybe not" which we saw using wget and md5sum. I'm thinking
how to deal with the situation.

On Mon, 2009-04-06 at 12:10 -0500, Michael Wilde wrote:
> With this sites entry:
> 
> <pool handle="qb" >
>    <profile namespace="globus" key="project">TG-CDA070002T</profile>
>    <execution provider="coaster" url="queenbee.loni-lsu.teragrid.org"
>               jobManager="gt2:pbs" />
>    <gridftp url="gsiftp://qb1.loni.org"/>
>    <workdirectory>/home/ux454325/swiftwork</workdirectory>
> </pool>
> 
> I get the error below. Files are on CI net at /home/wilde/swift/lab.
> 
> I will try to copy coaster boot logs and gram logs to same place when I 
> find them, in subdirs named by $RunID.logs.
> 
> --
> 
> com$ swift -tc.file tc.data -sites.file qb.coasters.xml cat.swift
> Swift svn swift-r2809 cog-r2350
> 
> RunID: 20090406-1155-pgc5nj00
> Progress:
> Progress:  Stage in:1
> Progress:  Submitted:1
> Failed to transfer wrapper log from cat-20090406-1155-pgc5nj00/info/m on qb
> Progress:  Failed:1
> Execution failed:
>          Exception in cat:
> Arguments: [data.txt]
> Host: qb
> Directory: cat-20090406-1155-pgc5nj00/jobs/m/cat-m91ku09j
> stderr.txt:
> 
> stdout.txt:
> 
> ----
> 
> Caused by:
>          Cannot submit job: Cannot run program "qsub": 
> java.io.IOException: error=2, No such file or directory
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: 
> Cannot submit job: Cannot run program "qsub": java.io.IOException: 
> error=2, No such file or directory
>          at 
> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)
>          at 
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
>          at 
> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:50)
>          at 
> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)
>          at 
> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)
> Caused by: java.io.IOException: Cannot run program "qsub": 
> java.io.IOException: error=2, No such file or directory
>          at java.lang.ProcessBuilder.start(ProcessBuilder.java:459)
>          at java.lang.Runtime.exec(Runtime.java:593)
>          at 
> org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:73)
>          at 
> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)
>          ... 4 more
> Caused by: java.io.IOException: java.io.IOException: error=2, No such 
> file or directory
>          at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
>          at java.lang.ProcessImpl.start(ProcessImpl.java:65)
>          at java.lang.ProcessBuilder.start(ProcessBuilder.java:452)
>          ... 7 more
> 
> Cleaning up...
> Shutting down service at https://208.100.92.21:44166
> Got channel MetaChannel: 24235184 -> GSSSChannel-null(1)
> - Done
> com$ pwd
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