[Swift-devel] coaster problem with jobmanager=gt2:pbs

[Michael Wilde]

With this sites entry:

<pool handle="qb" >
   <profile namespace="globus" key="project">TG-CDA070002T</profile>
   <execution provider="coaster" url="queenbee.loni-lsu.teragrid.org"
              jobManager="gt2:pbs" />
   <gridftp url="gsiftp://qb1.loni.org"/>
   <workdirectory>/home/ux454325/swiftwork</workdirectory>
</pool>

I get the error below. Files are on CI net at /home/wilde/swift/lab.

I will try to copy coaster boot logs and gram logs to same place when I 
find them, in subdirs named by $RunID.logs.

--

com$ swift -tc.file tc.data -sites.file qb.coasters.xml cat.swift
Swift svn swift-r2809 cog-r2350

RunID: 20090406-1155-pgc5nj00
Progress:
Progress:  Stage in:1
Progress:  Submitted:1
Failed to transfer wrapper log from cat-20090406-1155-pgc5nj00/info/m on qb
Progress:  Failed:1
Execution failed:
         Exception in cat:
Arguments: [data.txt]
Host: qb
Directory: cat-20090406-1155-pgc5nj00/jobs/m/cat-m91ku09j
stderr.txt:

stdout.txt:

----

Caused by:
         Cannot submit job: Cannot run program "qsub": 
java.io.IOException: error=2, No such file or directory
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: 
Cannot submit job: Cannot run program "qsub": java.io.IOException: 
error=2, No such file or directory
         at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)
         at 
org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
         at 
org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:50)
         at 
org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)
         at 
org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)
Caused by: java.io.IOException: Cannot run program "qsub": 
java.io.IOException: error=2, No such file or directory
         at java.lang.ProcessBuilder.start(ProcessBuilder.java:459)
         at java.lang.Runtime.exec(Runtime.java:593)
         at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:73)
         at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)
         ... 4 more
Caused by: java.io.IOException: java.io.IOException: error=2, No such 
file or directory
         at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
         at java.lang.ProcessImpl.start(ProcessImpl.java:65)
         at java.lang.ProcessBuilder.start(ProcessBuilder.java:452)
         ... 7 more

Cleaning up...
Shutting down service at https://208.100.92.21:44166
Got channel MetaChannel: 24235184 -> GSSSChannel-null(1)
- Done
com$ pwd