[Swift-devel] Re: next hurdle

[Mihael Hategan]

On Tue, 2008-02-12 at 15:00 -0800, Mike Kubal wrote:
> One of the applications (antechamber) being launched
> by swift on the uc-teragrid is failing with an exit
> code of 1 and a message of 'cannot execute binary'
> file. It sounds like it might be attempting to run on
> one of the 32-bit nodes, though in my tc-file, it
> specifies to run only on the  64-bit nodes.
> 
> The only difference between a successful run and the
> error above are the lines below in from the
> sites-file:
> 
> (with this line I get the error above)
> <execution provider="gt4" jobmanager="PBS"
> url="tg-grid1.uc.teragrid.org" />
> 
> 
> (with this line instead the job succeeds)
> <jobmanager universe="vanilla"
> url="tg-grid1.uc.teragrid.org" major="4" minor="0"
> patch="0"/>

That's running with fork on the head node.

> 
> I rsynced the log and kickstart files to
> /home/benc/swift-logs at UC.
> 
> Cheers, 
> 
> Mike
> 
> --- Mihael Hategan <hategan at mcs.anl.gov> wrote:
> 
> > Would it be worth trying to find out why it worked
> > with pre-WS GRAM?
> > 
> > Mihael
> > 
> > On Tue, 2008-02-12 at 14:20 -0800, Mike Kubal wrote:
> > > Thanks Joe. This solved the account id problem.
> > > 
> > > --- joseph insley <insley at mcs.anl.gov> wrote:
> > > 
> > > > Mike K,
> > > > 
> > > > looks like you have the wrong value in your
> > > > .tg_default_project file:
> > > > 
> > > > insley at tg-viz-login1:~> more
> > > > ~kubal/.tg_default_project
> > > > TG-MCA01S018
> > > > 
> > > > you should be using: TG-MCB010025N
> > > > 
> > > > insley at tg-viz-login1:~> tgusage -i -u kubal
> > > > 
> > > > [snip]
> > > > 
> > > > Account: TG-MCA01S018
> > > > Title: Computational Studies of Complex
> > Processes in
> > > > Biological  
> > > > Macromolecular Systems
> > > > Resource: teragrid
> > > > 
> > > > ****
> > > > Local project name on dtf.anl.teragrid is
> > > > TG-MCB010025N
> > > > ****
> > > > 
> > > > Allocation Period: 2007-08-03 to 2008-03-31
> > > > 
> > > > Name (Last First) or Account       Total     
> > > > Remaining        Usage
> > > > ----------------------------     ---------- 
> > > > ------------   ----------
> > > >     Kubal  Michael                101880 SU    
> > > > 99358 SU       296 SU
> > > >
> > >
> >
> ----------------------------------------------------------------------
> > > >     TG-MCA01S018                  101880 SU    
> > > > 99358 SU      2522 SU
> > > > 
> > > > 
> > > > 
> > > > On Feb 12, 2008, at 2:37 PM, Mihael Hategan
> > wrote:
> > > > 
> > > > > You should probably remove the line
> > completely.
> > > > >
> > > > > Did you chose a default project on the login
> > node
> > > > with tgprojects?
> > > > >
> > > > > On Tue, 2008-02-12 at 12:34 -0800, Mike Kubal
> > > > wrote:
> > > > >> I tried running with the account id removed
> > from
> > > > the
> > > > >> sites.file as in the following line:
> > > > >>
> > > > >> <profile namespace="globus" key=""></profile>
> > > > >>
> > > > >> but received the same error.
> > > > >>
> > > > >>
> > > > >>
> > > > >> --- Mihael Hategan <hategan at mcs.anl.gov>
> > wrote:
> > > > >>
> > > > >>> Is this the same for pre-WS GRAM?
> > > > >>>
> > > > >>> On Tue, 2008-02-12 at 14:20 -0600, Stuart
> > Martin
> > > > >>> wrote:
> > > > >>>> that's right, qsub is used for PBS (and
> > some
> > > > >>> others too)
> > > > >>>> bsub is LSF
> > > > >>>> condor_q for condor
> > > > >>>> ...
> > > > >>>>
> > > > >>>> -Stu
> > > > >>>>
> > > > >>>> On Feb 12, 2008, at Feb 12, 2:15 PM, Mihael
> > > > >>> Hategan wrote:
> > > > >>>>
> > > > >>>>>
> > > > >>>>> On Tue, 2008-02-12 at 12:09 -0800, Mike
> > Kubal
> > > > >>> wrote:
> > > > >>>>>> I'll give it a try.
> > > > >>>>>>
> > > > >>>>>> When using GRAM4, is qsub the method used
> > to
> > > > >>>>>> ultimately put the job in the queue?
> > > > >>>>>
> > > > >>>>> Looks like it. I also believe it's the
> > case
> > > > with
> > > > >>> pre-ws gram. Stu
> > > > >>>>> may be
> > > > >>>>> able to clarify.
> > > > >>>>>
> > > > >>>>>>
> > > > >>>>>> MikeK
> > > > >>>>>> --- Mihael Hategan <hategan at mcs.anl.gov>
> > > > wrote:
> > > > >>>>>>
> > > > >>>>>>> While this doesn't solve the underlying
> > > > >>> problem, it
> > > > >>>>>>> may help you get
> > > > >>>>>>> this to work: log into tg-login1.uc...,
> > set
> > > > >>> this
> > > > >>>>>>> project as default,
> > > > >>>>>>> then remove the project spec from the
> > sites
> > > > >>> file and
> > > > >>>>>>> try again.
> > > > >>>>>>>
> > > > >>>>>>> Mihael
> > > > >>>>>>>
> > > > >>>>>>> On Tue, 2008-02-12 at 11:36 -0800, Mike
> > > > Kubal
> > > > >>> wrote:
> > > > >>>>>>>> Yes, I believe you are right. The
> > kickstart
> > > > >>>>>>> message
> > > > >>>>>>>> may be only a warning. After digging a
> > > > little
> > > > >>>>>>> deeper
> > > > >>>>>>>> it appears the job is failing due to a
> > > > >>>>>>> project/account
> > > > >>>>>>>> id problem. I get the following error:
> > > > >>>>>>>>
> > > > >>>>>>>> Caused by:
> > > > >>>>>>>>        The executable could not be
> > > > started.,
> > > > >>>>>>> qsub:
> > > > >>>>>>>> Invalid Account MSG=invalid account
> > > > >>>>>>>>
> > > > >>>>>>>> I am specifying the same TG-account in
> > my
> > > > >>>>>>> site-file
> > > > >>>>>>>> for the gram4 run that fails, as in the
> > > > >>> site-file
> > > > >>>>>>> for
> > > > >>>>>>>> the pre-ws job that suceeds. This is
> > the
> > > > same
> > > > >>>>>>> project,
> > > > >>>>>>>> TG-MCA01S018, that is set in my
> > > > >>>>>>> .tg_default_project
> > > > >>>>>>>> file in ~kubal/ on the UC teragrid.
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>> --- Ben Clifford <benc at hawaga.org.uk>
> > > > wrote:
> > > > >>>>>>>>
> > > > >>>>>>>>> yeah, run that same without kickstart.
> > the
> > > > >>> error
> > > > >>>>>>>>> reported is that
> > > > >>>>>>>>> kickstart didn't work right - but
> > there's
> > > > >>>>>>> perhaps
> > > > >>>>>>>>> some underlying error.
> > > > >>>>>>>>> -- 
> > > > >>>>>>>>>
> > > > >>>>>>>>>
> > > > >>>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>>
> > > > >>>>>>>
> > > > >>>>>>
> > > > >>>
> > > > >>
> > > >
> > >
> >
> _____________________________________________________________________
> > > > 
> > > > >> _______________
> > 
> === message truncated ===
> 
> 
> 
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