[Swift-devel] script that returns bad parameter error

[Mihael Hategan]

I think I've seen fork complaining about "project" before. Can you try
to comment that profile tag out and run with fork again?

It may also be useful to post the logs since they may contain stack
traces that point more accurately towards the problem.

Mihael

On Thu, 2007-12-06 at 08:15 -0800, Mike Kubal wrote:
> Hi Mihael,
> 
> No need to apologize, I appreciate your feedback.
> 
> Here is the sites file.
> 
> <?xml version="1.0" encoding="UTF-8"?>
> <config
> xmlns="http://www.griphyn.org/chimera/GVDS-PoolConfig"
> xsi:schemaLocation="http://www.griphyn.org/chimera/GVDS
>  http://www.griphyn.org/chimera/gvds-poolcfg-1.5.xsd"
> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
> version="1.5">
> 
> <pool handle="Lear" sysinfo="INTEL64::LINUX">
>     <gridftp 
> url="gsiftp://gridftp.purdue.teragrid.org"
> storage="/autohome/u102/mkubal/SWIFT_working_dir"
> major="2" minor="2" patch="4">
>     </gridftp>
>     <profile namespace="globus"
> key="project">UC-MCA01S018</profile>
>     <jobmanager universe="vanilla"
> url="tg-gatekeeper.purdue.teragrid.org:2119/jobmanager-fork"
> major="2" minor="0" patch="0"/>
>    
> <workdirectory>/autohome/u102/mkubal/SWIFT_working_dir</workdirectory>
>   </pool>
> </config>
> 
> I  have also tried the condor job manager at Purdue
> that has the same url except that it ends in '-condor'
> instead of '-fork' . I get the same error.
> 
> Cheers,
> 
> Mike
> 
> 
> 
> 
> 
> --- Mihael Hategan <hategan at mcs.anl.gov> wrote:
> 
> > Sorry. My email wasn't very friendly. I was trying
> > to type less :)
> > 
> > On Wed, 2007-12-05 at 17:42 -0600, Michael Wilde
> > wrote:
> > > Mike,
> > > 
> > > Mihael suspects that a bad globus parameter in
> > your sites.xml file is 
> > > causing this error message.  So please send that
> > so we can take a look.
> > > 
> > > Thanks,
> > > 
> > > MikeW
> > > 
> > > On 12/5/07 4:45 PM, Mihael Hategan wrote:
> > > > Post the sites file.
> > > > 
> > > > On Wed, 2007-12-05 at 14:33 -0800, Mike Kubal
> > wrote:
> > > >> Unfortunately I still get the same error:
> > > >>
> > > >> run_fred failed
> > > >> The following errors have occurred:
> > > >> 1. Application "run_fred" failed (Parameter not
> > > >> supported)
> > > >>         Arguments: "-rec, 1beh.oeb.gz, -dbase,
> > > >> Marsha_lig_1.mol2, -prefix, Marsha_lig_1"
> > > >>         Host: Lear
> > > >>         Directory:
> > > >> run_fred-2k0629rvbffz0/run_fred-r81pg3li
> > > >>         STDERR: 
> > > >>         STDOUT:
> > > >>
> > > >> Does 'Parameter not supported' usually refer to
> > an
> > > >> argument of the remote application? I wonder if
> > it
> > > >> does not like the .oeb.gz file?
> > > >>
> > > >>
> > > >>
> > > >> --- Ben Clifford <benc at hawaga.org.uk> wrote:
> > > >>
> > > >>>
> > > >>> On Wed, 5 Dec 2007, Mike Kubal wrote:
> > > >>>
> > > >>>>              run_fred "-rec" receptor_file
> > > >>> "-dbase"
> > > >>>> ligand_file "-prefix" ligand_prefix;
> > > >>> In here, take the filenames of each file by
> > saying 
> > > >>> @filenmame(receptor_file), like this:
> > > >>>
> > > >>>>             run_fred "-rec"
> > > >>> @filename(receptor_file) "-dbase"
> > > >>>> @filename(ligand_file) "-prefix"
> > ligand_prefix;
> > > >>> -- 
> > > >>>
> > _______________________________________________
> > > >>> Swift-devel mailing list
> > > >>> Swift-devel at ci.uchicago.edu
> > > >>>
> > > >>
> >
> http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
> > > >>>
> > > >>
> > > >>
> > > >>      
> >
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> > > >>
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> > > >>
> >
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> 
> 
> 
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