[Swift-devel] script that returns bad parameter error

[Mike Kubal]

Hi Mihael,

No need to apologize, I appreciate your feedback.

Here is the sites file.

<?xml version="1.0" encoding="UTF-8"?>
<config
xmlns="http://www.griphyn.org/chimera/GVDS-PoolConfig"
xsi:schemaLocation="http://www.griphyn.org/chimera/GVDS
 http://www.griphyn.org/chimera/gvds-poolcfg-1.5.xsd"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
version="1.5">

<pool handle="Lear" sysinfo="INTEL64::LINUX">
    <gridftp 
url="gsiftp://gridftp.purdue.teragrid.org"
storage="/autohome/u102/mkubal/SWIFT_working_dir"
major="2" minor="2" patch="4">
    </gridftp>
    <profile namespace="globus"
key="project">UC-MCA01S018</profile>
    <jobmanager universe="vanilla"
url="tg-gatekeeper.purdue.teragrid.org:2119/jobmanager-fork"
major="2" minor="0" patch="0"/>
   
<workdirectory>/autohome/u102/mkubal/SWIFT_working_dir</workdirectory>
  </pool>
</config>

I  have also tried the condor job manager at Purdue
that has the same url except that it ends in '-condor'
instead of '-fork' . I get the same error.

Cheers,

Mike





--- Mihael Hategan <hategan at mcs.anl.gov> wrote:

> Sorry. My email wasn't very friendly. I was trying
> to type less :)
> 
> On Wed, 2007-12-05 at 17:42 -0600, Michael Wilde
> wrote:
> > Mike,
> > 
> > Mihael suspects that a bad globus parameter in
> your sites.xml file is 
> > causing this error message.  So please send that
> so we can take a look.
> > 
> > Thanks,
> > 
> > MikeW
> > 
> > On 12/5/07 4:45 PM, Mihael Hategan wrote:
> > > Post the sites file.
> > > 
> > > On Wed, 2007-12-05 at 14:33 -0800, Mike Kubal
> wrote:
> > >> Unfortunately I still get the same error:
> > >>
> > >> run_fred failed
> > >> The following errors have occurred:
> > >> 1. Application "run_fred" failed (Parameter not
> > >> supported)
> > >>         Arguments: "-rec, 1beh.oeb.gz, -dbase,
> > >> Marsha_lig_1.mol2, -prefix, Marsha_lig_1"
> > >>         Host: Lear
> > >>         Directory:
> > >> run_fred-2k0629rvbffz0/run_fred-r81pg3li
> > >>         STDERR: 
> > >>         STDOUT:
> > >>
> > >> Does 'Parameter not supported' usually refer to
> an
> > >> argument of the remote application? I wonder if
> it
> > >> does not like the .oeb.gz file?
> > >>
> > >>
> > >>
> > >> --- Ben Clifford <benc at hawaga.org.uk> wrote:
> > >>
> > >>>
> > >>> On Wed, 5 Dec 2007, Mike Kubal wrote:
> > >>>
> > >>>>              run_fred "-rec" receptor_file
> > >>> "-dbase"
> > >>>> ligand_file "-prefix" ligand_prefix;
> > >>> In here, take the filenames of each file by
> saying 
> > >>> @filenmame(receptor_file), like this:
> > >>>
> > >>>>             run_fred "-rec"
> > >>> @filename(receptor_file) "-dbase"
> > >>>> @filename(ligand_file) "-prefix"
> ligand_prefix;
> > >>> -- 
> > >>>
> _______________________________________________
> > >>> Swift-devel mailing list
> > >>> Swift-devel at ci.uchicago.edu
> > >>>
> > >>
>
http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
> > >>>
> > >>
> > >>
> > >>      
>
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> > >>
> > >> _______________________________________________
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> > >> Swift-devel at ci.uchicago.edu
> > >>
>
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> > >>
> > > 
> > > _______________________________________________
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> > > Swift-devel at ci.uchicago.edu
> > >
>
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> > > 
> > > 
> > 
> 
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> 



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