[Swift-devel] Q about MolDyn
Mihael Hategan
hategan at mcs.anl.gov
Tue Aug 7 01:02:44 CDT 2007
On Mon, 2007-08-06 at 17:25 -0500, Veronika Nefedova wrote:
> OK. I accidentally closed viper window where I started the workflow.
> The workflow was started with & so it was supposed to stay up even if
> I exited the shell. But apparently it didn't!
I don't think running it in the background prevents it from dying when
the parent process dies. Using nohup will probably do what you want.
>
> This is the last entry in the log:
>
> 2007-08-06 17:16:59,483 INFO ResourcePool Destroying remote service
> instance... dummy function, this doesn't really do anything...
>
> (and it doesn't change ever since).
>
> What went wrong ? Why closing the shell actually killed the job? (ps
> shows no swift job)
> I checked 'history' and in fact the job was started with &:
>
> 999 swift -tc.file tc-uc.data -sites.file sites-uc-64.xml -debug
> MolDyn-244-loops.swift &
>
> I'll restart the workflow in 30 mins or so (from home) again.
>
> Sigh...
>
> Nika
>
>
> On Aug 6, 2007, at 4:29 PM, Veronika Nefedova wrote:
>
> > Ioan, its all was due to NFS problems, I am convinced now...
> >
> > I restarted the run, the log is ~nefedova/alamines/MolDyn-244-loops-
> > hxl1glhtqsag0.log
> >
> > Nika
> >
> > On Aug 6, 2007, at 4:20 PM, Ioan Raicu wrote:
> >
> >> Just to debug further.... I picked out 1 task at random from the
> >> Swift log...
> >> iraicu at viper:/home/nefedova/alamines> cat MolDyn-244-loops-
> >> dbui34oxjr4j2.log | grep "urn:0-1-62-0-1186429258791"
> >> 2007-08-06 14:47:03,281 DEBUG TaskImpl Task(type=2, identity=urn:
> >> 0-1-62-0-1186429258791) setting status to Submitted
> >> 2007-08-06 14:47:03,281 DEBUG TaskImpl Task(type=2, identity=urn:
> >> 0-1-62-0-1186429258791) setting status to Active
> >> 2007-08-06 14:47:03,704 DEBUG TaskImpl Task(type=2, identity=urn:
> >> 0-1-62-0-1186429258791) setting status to Failed Exception in getFile
> >>
> >> but in my log, it is nowhere to be found...
> >> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> cat
> >> GenericPortalWS_taskPerf.txt | grep "urn:0-1-62-0-1186429258791"
> >>
> >> What does "setting status to Failed Exception in getFile" mean?
> >> Could this mean that it failed on the data staging part, and that
> >> it never made it to Falkon?
> >>
> >> BTW, it lloks as if there were really 539 jobs submitted...
> >>
> >> iraicu at viper:/home/nefedova/alamines> grep "Submitted" MolDyn-244-
> >> loops-dbui34oxjr4j2.log | wc
> >> 539 5390 62835
> >>
> >> but again, only 57 made it to Falkon, and there were no exceptions
> >> thrown anywhere to indicate that something unusual happened.
> >>
> >> Ioan
> >>
> >> Ioan Raicu wrote:
> >>> Falkon only has 57 tasks received, here they are:
> >>> tg-viz-login.uc.teragrid.org:/home/iraicu/java/Falkon_v0.8.1/
> >>> service/logs/GenericPortalWS.txt.0.summary
> >>>
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> pre_ch-vsk58efi stdout.txt stderr.txt . ./m179.mol2 ./m050.mol2
> >>> m179_am1 m050_am1 /disks/scratchgpfs1/iraicu/ModLyn/bin/pre-
> >>> antch.pl
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-xsk58efi stdout.txt stderr.txt m179_am1 m179_am1.rtf
> >>> m179_am1.crd m179_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m179_am1 -fi mol2 -rn m179 -o m179_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-ysk58efi stdout.txt stderr.txt m050_am1 m050_am1.rtf
> >>> m050_am1.crd m050_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m050_am1 -fi mol2 -rn m050 -o m050_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> chrm-0tk58efi equil_solv.out_m050 stderr.txt equil_solv.inp
> >>> parm03_gaff_all.rtf parm03_gaffnb_all.prm equil_solv.inp
> >>> m050_am1.rtf m050_am1.prm m050_am1.crd water_400.crd
> >>> equil_solv.out_m050 solv_m050.psf solv_m050_eq.crd solv_m050.rst
> >>> solv_m050.trj solv_m050_min.crd /disks/scratchgpfs1/iraicu/
> >>> ModLyn/bin/charmm.sh system:solv_m050 title:solv stitle:m050
> >>> rtffile:parm03_gaff_all.rtf paramfile:parm03_gaffnb_all.prm
> >>> gaff:m050_am1 nwater:400 ligcrd:lyz rforce:0 iseed:3131887 rwater:
> >>> 15 nstep:10000 minstep:100 skipstep:100 startstep:10000
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> chrm-zsk58efi equil_solv.out_m179 stderr.txt equil_solv.inp
> >>> parm03_gaff_all.rtf parm03_gaffnb_all.prm equil_solv.inp
> >>> m179_am1.rtf m179_am1.prm m179_am1.crd water_400.crd
> >>> equil_solv.out_m179 solv_m179.psf solv_m179_eq.crd solv_m179.rst
> >>> solv_m179.trj solv_m179_min.crd /disks/scratchgpfs1/iraicu/
> >>> ModLyn/bin/charmm.sh system:solv_m179 title:solv stitle:m179
> >>> rtffile:parm03_gaff_all.rtf paramfile:parm03_gaffnb_all.prm
> >>> gaff:m179_am1 nwater:400 ligcrd:lyz rforce:0 iseed:3131887 rwater:
> >>> 15 nstep:10000 minstep:100 skipstep:100 startstep:10000
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> pre_ch-38lc8efi stdout.txt stderr.txt . ./m197.mol2 ./
> >>> m129.mol2 ./m069.mol2 ./m163.mol2 ./m128.mol2 ./m035.mol2 ./
> >>> m070.mol2 ./m221.mol2 ./m162.mol2 ./m198.mol2 ./m034.mol2 ./
> >>> m001.mol2 ./m220.mol2 ./m033.mol2 ./m161.mol2 ./m032.mol2 ./
> >>> m160.mol2 ./m130.mol2 ./m071.mol2 ./m002.mol2 ./m199.mol2 ./
> >>> m175.mol2 ./m234.mol2 ./m048.mol2 ./m107.mol2 ./m047.mol2 ./
> >>> m106.mol2 ./m124.mol2 ./m193.mol2 ./m225.mol2 ./m066.mol2 ./
> >>> m125.mol2 ./m176.mol2 ./m194.mol2 ./m224.mol2 ./m235.mol2 ./
> >>> m067.mol2 ./m165.mol2 ./m049.mol2 ./m126.mol2 ./m166.mol2 ./
> >>> m108.mol2 ./m195.mol2 ./m038.mol2 ./m059.mol2 ./m036.mol2 ./
> >>> m186.mol2 ./m164.mol2 ./m117.mol2 ./m223.mol2 ./m058.mol2 ./
> >>> m037.mol2 ./m188.mol2 ./m068.mol2 ./m119.mol2 ./m187.mol2 ./
> >>> m196.mol2 ./m118.mol2 ./m127.mol2 ./m222.mol2 ./m189.mol2 ./
> >>> m060.mol2 ./m236.mol2 ./m109.mol2 ./m177.mol2 ./m050.mol2 ./
> >>> m179.mol2 ./m178.mol2 ./m123.mol2 ./m237.mol2 ./m110.mol2 ./
> >>> m191.mol2 ./m100.mol2 ./m064.mol2 ./m041.mol2 ./m238.mol2 ./
> >>> m063.mol2 ./m228.mol2 ./m051.mol2 ./m122.mol2 ./m169.mol2 ./
> >>> m121.mol2 ./m190.mol2 ./m120.mol2 ./m062.mol2 ./m065.mol2 ./
> >>> m039.mol2 ./m192.mol2 ./m167.mol2 ./m227.mol2 ./m040.mol2 ./
> >>> m226.mol2 ./m168.mol2 ./m239.mol2 ./m052.mol2 ./m111.mol2 ./
> >>> m180.mol2 ./m053.mol2 ./m112.mol2 ./m181.mol2 ./m240.mol2 ./
> >>> m054.mol2 ./m044.mol2 ./m113.mol2 ./m230.mol2 ./m103.mol2 ./
> >>> m229.mol2 ./m061.mol2 ./m042.mol2 ./m101.mol2 ./m170.mol2 ./
> >>> m043.mol2 ./m102.mol2 ./m171.mol2 ./m151.mol2 ./m083.mol2 ./
> >>> m210.mol2 ./m014.mol2 ./m023.mol2 ./m200.mol2 ./m092.mol2 ./
> >>> m091.mol2 ./m150.mol2 ./m209.mol2 ./m022.mol2 ./m024.mol2 ./
> >>> m093.mol2 ./m015.mol2 ./m084.mol2 ./m142.mol2 ./m201.mol2 ./
> >>> m016.mol2 ./m085.mol2 ./m143.mol2 ./m202.mol2 ./m010.mol2 ./
> >>> m212.mol2 ./m138.mol2 ./m026.mol2 ./m011.mol2 ./m095.mol2 ./
> >>> m139.mol2 ./m154.mol2 ./m211.mol2 ./m025.mol2 ./m094.mol2 ./
> >>> m153.mol2 ./m213.mol2 ./m080.mol2 ./m012.mol2 ./m152.mol2 ./
> >>> m081.mol2 ./m140.mol2 ./m013.mol2 ./m082.mol2 ./m141.mol2 ./
> >>> m028.mol2 ./m097.mol2 ./m155.mol2 ./m008.mol2 ./m214.mol2 ./
> >>> m135.mol2 ./m029.mol2 ./m076.mol2 ./m098.mol2 ./m007.mol2 ./
> >>> m156.mol2 ./m134.mol2 ./m215.mol2 ./m137.mol2 ./m079.mol2 ./
> >>> m009.mol2 ./m078.mol2 ./m077.mol2 ./m096.mol2 ./m136.mol2 ./
> >>> m027.mol2 ./m132.mol2 ./m158.mol2 ./m073.mol2 ./m217.mol2 ./
> >>> m030.mol2 ./m159.mol2 ./m072.mol2 ./m218.mol2 ./m003.mol2 ./
> >>> m031.mol2 ./m004.mol2 ./m219.mol2 ./m131.mol2 ./m074.mol2 ./
> >>> m133.mol2 ./m006.mol2 ./m075.mol2 ./m157.mol2 ./m099.mol2 ./
> >>> m005.mol2 ./m216.mol2 ./m090.mol2 ./m021.mol2 ./m208.mol2 ./
> >>> m149.mol2 ./m020.mol2 ./m207.mol2 ./m148.mol2 ./m088.mol2 ./
> >>> m089.mol2 ./m206.mol2 ./m147.mol2 ./m019.mol2 ./m205.mol2 ./
> >>> m146.mol2 ./m087.mol2 ./m018.mol2 ./m204.mol2 ./m145.mol2 ./
> >>> m086.mol2 ./m017.mol2 ./m144.mol2 ./m203.mol2 ./m057.mol2 ./
> >>> m116.mol2 ./m232.mol2 ./m173.mol2 ./m105.mol2 ./m046.mol2 ./
> >>> m231.mol2 ./m172.mol2 ./m104.mol2 ./m045.mol2 ./m174.mol2 ./
> >>> m233.mol2 ./m244.mol2 ./m185.mol2 ./m182.mol2 ./m243.mol2 ./
> >>> m055.mol2 ./m241.mol2 ./m183.mol2 ./m114.mol2 ./m056.mol2 ./
> >>> m242.mol2 ./m184.mol2 ./m115.mol2 m197_am1 m129_am1 m069_am1
> >>> m163_am1 m128_am1 m035_am1 m070_am1 m221_am1 m162_am1 m198_am1
> >>> m034_am1 m001_am1 m220_am1 m033_am1 m161_am1 m032_am1 m160_am1
> >>> m130_am1 m071_am1 m002_am1 m199_am1 m175_am1 m234_am1 m048_am1
> >>> m107_am1 m047_am1 m106_am1 m124_am1 m193_am1 m225_am1 m066_am1
> >>> m125_am1 m176_am1 m194_am1 m224_am1 m235_am1 m067_am1 m165_am1
> >>> m049_am1 m126_am1 m166_am1 m108_am1 m195_am1 m038_am1 m059_am1
> >>> m036_am1 m186_am1 m164_am1 m223_am1 m117_am1 m037_am1 m058_am1
> >>> m068_am1 m188_am1 m119_am1 m196_am1 m187_am1 m222_am1 m127_am1
> >>> m118_am1 m189_am1 m060_am1 m236_am1 m109_am1 m177_am1 m050_am1
> >>> m179_am1 m123_am1 m178_am1 m237_am1 m100_am1 m191_am1 m110_am1
> >>> m041_am1 m064_am1 m228_am1 m063_am1 m238_am1 m169_am1 m122_am1
> >>> m051_am1 m121_am1 m190_am1 m120_am1 m062_am1 m039_am1 m065_am1
> >>> m167_am1 m192_am1 m227_am1 m040_am1 m226_am1 m168_am1 m239_am1
> >>> m052_am1 m111_am1 m180_am1 m053_am1 m112_am1 m181_am1 m240_am1
> >>> m054_am1 m044_am1 m113_am1 m230_am1 m103_am1 m229_am1 m061_am1
> >>> m042_am1 m101_am1 m170_am1 m043_am1 m102_am1 m171_am1 m151_am1
> >>> m083_am1 m210_am1 m014_am1 m023_am1 m200_am1 m092_am1 m091_am1
> >>> m150_am1 m209_am1 m022_am1 m024_am1 m093_am1 m015_am1 m084_am1
> >>> m142_am1 m201_am1 m016_am1 m085_am1 m143_am1 m202_am1 m010_am1
> >>> m212_am1 m138_am1 m026_am1 m011_am1 m095_am1 m139_am1 m154_am1
> >>> m211_am1 m025_am1 m094_am1 m153_am1 m213_am1 m080_am1 m012_am1
> >>> m152_am1 m081_am1 m140_am1 m013_am1 m082_am1 m141_am1 m028_am1
> >>> m097_am1 m155_am1 m008_am1 m214_am1 m135_am1 m029_am1 m076_am1
> >>> m098_am1 m007_am1 m156_am1 m134_am1 m215_am1 m137_am1 m079_am1
> >>> m009_am1 m078_am1 m077_am1 m096_am1 m136_am1 m027_am1 m132_am1
> >>> m158_am1 m073_am1 m217_am1 m030_am1 m159_am1 m072_am1 m218_am1
> >>> m003_am1 m031_am1 m004_am1 m219_am1 m131_am1 m074_am1 m133_am1
> >>> m006_am1 m075_am1 m157_am1 m099_am1 m216_am1 m005_am1 m090_am1
> >>> m021_am1 m208_am1 m149_am1 m020_am1 m207_am1 m148_am1 m089_am1
> >>> m088_am1 m206_am1 m147_am1 m019_am1 m205_am1 m146_am1 m087_am1
> >>> m018_am1 m204_am1 m145_am1 m086_am1 m017_am1 m144_am1 m203_am1
> >>> m057_am1 m116_am1 m232_am1 m173_am1 m105_am1 m046_am1 m231_am1
> >>> m172_am1 m104_am1 m045_am1 m174_am1 m233_am1 m244_am1 m185_am1
> >>> m182_am1 m243_am1 m055_am1 m241_am1 m183_am1 m114_am1 m056_am1
> >>> m242_am1 m184_am1 m115_am1 /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> pre-antch.pl
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-58lc8efi stdout.txt stderr.txt m197_am1 m197_am1.rtf
> >>> m197_am1.crd m197_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m197_am1 -fi mol2 -rn m197 -o m197_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-48lc8efi stdout.txt stderr.txt m129_am1 m129_am1.rtf
> >>> m129_am1.crd m129_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m129_am1 -fi mol2 -rn m129 -o m129_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-68lc8efi stdout.txt stderr.txt m069_am1 m069_am1.rtf
> >>> m069_am1.crd m069_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m069_am1 -fi mol2 -rn m069 -o m069_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-88lc8efi stdout.txt stderr.txt m163_am1 m163_am1.rtf
> >>> m163_am1.crd m163_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m163_am1 -fi mol2 -rn m163 -o m163_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-78lc8efi stdout.txt stderr.txt m128_am1 m128_am1.rtf
> >>> m128_am1.crd m128_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m128_am1 -fi mol2 -rn m128 -o m128_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-98lc8efi stdout.txt stderr.txt m035_am1 m035_am1.rtf
> >>> m035_am1.crd m035_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m035_am1 -fi mol2 -rn m035 -o m035_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-a8lc8efi stdout.txt stderr.txt m070_am1 m070_am1.rtf
> >>> m070_am1.crd m070_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m070_am1 -fi mol2 -rn m070 -o m070_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-b8lc8efi stdout.txt stderr.txt m221_am1 m221_am1.rtf
> >>> m221_am1.crd m221_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m221_am1 -fi mol2 -rn m221 -o m221_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-c8lc8efi stdout.txt stderr.txt m162_am1 m162_am1.rtf
> >>> m162_am1.crd m162_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m162_am1 -fi mol2 -rn m162 -o m162_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-d8lc8efi stdout.txt stderr.txt m198_am1 m198_am1.rtf
> >>> m198_am1.crd m198_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m198_am1 -fi mol2 -rn m198 -o m198_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-e8lc8efi stdout.txt stderr.txt m034_am1 m034_am1.rtf
> >>> m034_am1.crd m034_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m034_am1 -fi mol2 -rn m034 -o m034_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-f8lc8efi stdout.txt stderr.txt m001_am1 m001_am1.rtf
> >>> m001_am1.crd m001_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m001_am1 -fi mol2 -rn m001 -o m001_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-h8lc8efi stdout.txt stderr.txt m033_am1 m033_am1.rtf
> >>> m033_am1.crd m033_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m033_am1 -fi mol2 -rn m033 -o m033_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-g8lc8efi stdout.txt stderr.txt m220_am1 m220_am1.rtf
> >>> m220_am1.crd m220_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m220_am1 -fi mol2 -rn m220 -o m220_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-i8lc8efi stdout.txt stderr.txt m161_am1 m161_am1.rtf
> >>> m161_am1.crd m161_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m161_am1 -fi mol2 -rn m161 -o m161_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-j8lc8efi stdout.txt stderr.txt m032_am1 m032_am1.rtf
> >>> m032_am1.crd m032_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m032_am1 -fi mol2 -rn m032 -o m032_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-k8lc8efi stdout.txt stderr.txt m160_am1 m160_am1.rtf
> >>> m160_am1.crd m160_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m160_am1 -fi mol2 -rn m160 -o m160_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-l8lc8efi stdout.txt stderr.txt m130_am1 m130_am1.rtf
> >>> m130_am1.crd m130_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m130_am1 -fi mol2 -rn m130 -o m130_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-m8lc8efi stdout.txt stderr.txt m071_am1 m071_am1.rtf
> >>> m071_am1.crd m071_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m071_am1 -fi mol2 -rn m071 -o m071_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-o8lc8efi stdout.txt stderr.txt m199_am1 m199_am1.rtf
> >>> m199_am1.crd m199_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m199_am1 -fi mol2 -rn m199 -o m199_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-n8lc8efi stdout.txt stderr.txt m002_am1 m002_am1.rtf
> >>> m002_am1.crd m002_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m002_am1 -fi mol2 -rn m002 -o m002_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-p8lc8efi stdout.txt stderr.txt m175_am1 m175_am1.rtf
> >>> m175_am1.crd m175_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m175_am1 -fi mol2 -rn m175 -o m175_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-q8lc8efi stdout.txt stderr.txt m234_am1 m234_am1.rtf
> >>> m234_am1.crd m234_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m234_am1 -fi mol2 -rn m234 -o m234_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-s8lc8efi stdout.txt stderr.txt m107_am1 m107_am1.rtf
> >>> m107_am1.crd m107_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m107_am1 -fi mol2 -rn m107 -o m107_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-r8lc8efi stdout.txt stderr.txt m048_am1 m048_am1.rtf
> >>> m048_am1.crd m048_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m048_am1 -fi mol2 -rn m048 -o m048_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-v8lc8efi stdout.txt stderr.txt m124_am1 m124_am1.rtf
> >>> m124_am1.crd m124_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m124_am1 -fi mol2 -rn m124 -o m124_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-t8lc8efi stdout.txt stderr.txt m047_am1 m047_am1.rtf
> >>> m047_am1.crd m047_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m047_am1 -fi mol2 -rn m047 -o m047_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-u8lc8efi stdout.txt stderr.txt m106_am1 m106_am1.rtf
> >>> m106_am1.crd m106_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m106_am1 -fi mol2 -rn m106 -o m106_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-x8lc8efi stdout.txt stderr.txt m193_am1 m193_am1.rtf
> >>> m193_am1.crd m193_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m193_am1 -fi mol2 -rn m193 -o m193_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-y8lc8efi stdout.txt stderr.txt m225_am1 m225_am1.rtf
> >>> m225_am1.crd m225_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m225_am1 -fi mol2 -rn m225 -o m225_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-z8lc8efi stdout.txt stderr.txt m066_am1 m066_am1.rtf
> >>> m066_am1.crd m066_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m066_am1 -fi mol2 -rn m066 -o m066_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-09lc8efi stdout.txt stderr.txt m125_am1 m125_am1.rtf
> >>> m125_am1.crd m125_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m125_am1 -fi mol2 -rn m125 -o m125_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-29lc8efi stdout.txt stderr.txt m194_am1 m194_am1.rtf
> >>> m194_am1.crd m194_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m194_am1 -fi mol2 -rn m194 -o m194_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-19lc8efi stdout.txt stderr.txt m176_am1 m176_am1.rtf
> >>> m176_am1.crd m176_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m176_am1 -fi mol2 -rn m176 -o m176_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-39lc8efi stdout.txt stderr.txt m224_am1 m224_am1.rtf
> >>> m224_am1.crd m224_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m224_am1 -fi mol2 -rn m224 -o m224_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-49lc8efi stdout.txt stderr.txt m235_am1 m235_am1.rtf
> >>> m235_am1.crd m235_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m235_am1 -fi mol2 -rn m235 -o m235_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-69lc8efi stdout.txt stderr.txt m165_am1 m165_am1.rtf
> >>> m165_am1.crd m165_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m165_am1 -fi mol2 -rn m165 -o m165_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-59lc8efi stdout.txt stderr.txt m067_am1 m067_am1.rtf
> >>> m067_am1.crd m067_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m067_am1 -fi mol2 -rn m067 -o m067_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-79lc8efi stdout.txt stderr.txt m049_am1 m049_am1.rtf
> >>> m049_am1.crd m049_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m049_am1 -fi mol2 -rn m049 -o m049_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-89lc8efi stdout.txt stderr.txt m126_am1 m126_am1.rtf
> >>> m126_am1.crd m126_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m126_am1 -fi mol2 -rn m126 -o m126_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-99lc8efi stdout.txt stderr.txt m166_am1 m166_am1.rtf
> >>> m166_am1.crd m166_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m166_am1 -fi mol2 -rn m166 -o m166_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-a9lc8efi stdout.txt stderr.txt m108_am1 m108_am1.rtf
> >>> m108_am1.crd m108_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m108_am1 -fi mol2 -rn m108 -o m108_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-b9lc8efi stdout.txt stderr.txt m195_am1 m195_am1.rtf
> >>> m195_am1.crd m195_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m195_am1 -fi mol2 -rn m195 -o m195_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-d9lc8efi stdout.txt stderr.txt m038_am1 m038_am1.rtf
> >>> m038_am1.crd m038_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m038_am1 -fi mol2 -rn m038 -o m038_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-c9lc8efi stdout.txt stderr.txt m059_am1 m059_am1.rtf
> >>> m059_am1.crd m059_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m059_am1 -fi mol2 -rn m059 -o m059_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-e9lc8efi stdout.txt stderr.txt m186_am1 m186_am1.rtf
> >>> m186_am1.crd m186_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m186_am1 -fi mol2 -rn m186 -o m186_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-f9lc8efi stdout.txt stderr.txt m164_am1 m164_am1.rtf
> >>> m164_am1.crd m164_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m164_am1 -fi mol2 -rn m164 -o m164_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-h9lc8efi stdout.txt stderr.txt m036_am1 m036_am1.rtf
> >>> m036_am1.crd m036_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m036_am1 -fi mol2 -rn m036 -o m036_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-g9lc8efi stdout.txt stderr.txt m223_am1 m223_am1.rtf
> >>> m223_am1.crd m223_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m223_am1 -fi mol2 -rn m223 -o m223_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-j9lc8efi stdout.txt stderr.txt m058_am1 m058_am1.rtf
> >>> m058_am1.crd m058_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m058_am1 -fi mol2 -rn m058 -o m058_am1 -fo
> >>> charmm -c bcc
> >>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
> >>> antch-k9lc8efi stdout.txt stderr.txt m037_am1 m037_am1.rtf
> >>> m037_am1.crd m037_am1.prm /disks/scratchgpfs1/iraicu/ModLyn/bin/
> >>> antechamber.sh -s 2 -i m037_am1 -fi mol2 -rn m037 -o m037_am1 -fo
> >>> charmm -c bcc
> >>>
> >>>
> >>>
> >>> Veronika Nefedova wrote:
> >>>> Swift thinks that it sent 248 jobs.
> >>>>
> >>>> nefedova at viper:~/alamines> grep "Running job " MolDyn-244-loops-
> >>>> dbui34oxjr4j2.log | wc
> >>>> 248 6931 56718
> >>>> nefedova at viper:~/alamines>
> >>>>
> >>>> On Aug 6, 2007, at 3:27 PM, Ioan Raicu wrote:
> >>>>
> >>>>> Everything is idle, there is no work to be done...
> >>>>>
> >>>>> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> tail
> >>>>> GenericPortalWS_perf_per_sec.txt
> >>>>> 3510.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3511.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3512.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3513.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3514.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3515.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3516.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3517.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3518.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>> 3519.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
> >>>>>
> >>>>> 24 workers are registered but idle.... queue length 0, 57 jobs
> >>>>> completed.
> >>>>>
> >>>>> Also, see below all 57 jobs, they all finished with an exit
> >>>>> code of 0, in other words succesfully! How many jobs does
> >>>>> Swift think it sent?
> >>>>>
> >>>>> Ioan
> >>>>>
> >>>>> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> cat
> >>>>> GenericPortalWS_taskPerf.txt
> >>>>> //taskNum taskID workerID startTimeStamp execTimeStamp
> >>>>> resultsQueueTimeStamp endTimeStamp waitQueueTime ex
> >>>>> ecTime resultsQueueTime totalTime exitCode
> >>>>> 1 urn:0-0-1186428880921 192.5.198.70:50100 510496 560276 560614
> >>>>> 560629 49780 338 15 50133 0
> >>>>> 2 urn:0-1-1-0-1186428880939 192.5.198.70:50101 560984 561200
> >>>>> 561899 561909 216 699 10 925 0
> >>>>> 3 urn:0-1-2-0-1186428880941 192.5.198.70:50100 560991 561373
> >>>>> 562150 562159 382 777 9 1168 0
> >>>>> 4 urn:0-0-1186429254652 192.5.198.71:50100 972312 1034716
> >>>>> 1044916 1044926 62404 10200 10 72614 0
> >>>>> 5 urn:0-1-2-0-1186429255467 192.5.198.71:50101 1046318 1046453
> >>>>> 1047038 1047067 135 585 29 749 0
> >>>>> 6 urn:0-1-1-0-1186429255461 192.5.198.71:50100 1046315 1046429
> >>>>> 1053072 1053080 114 6643 8 6765 0
> >>>>> 7 urn:0-1-3-0-1186429255469 192.5.198.71:50101 1046320 1047051
> >>>>> 1054256 1054290 731 7205 34 7970 0
> >>>>> 8 urn:0-1-5-0-1186429255481 192.5.198.71:50101 1046324 1054267
> >>>>> 1054570 1054579 7943 303 9 8255 0
> >>>>> 9 urn:0-1-4-0-1186429255479 192.5.198.71:50100 1046322 1053087
> >>>>> 1056811 1056819 6765 3724 8 10497 0
> >>>>> 10 urn:0-1-6-0-1186429255484 192.5.198.71:50101 1046326 1054583
> >>>>> 1058691 1058719 8257 4108 28 12393 0
> >>>>> 11 urn:0-1-8-0-1186429255495 192.5.198.71:50101 1046331 1058704
> >>>>> 1059363 1059385 12373 659 22 13054 0
> >>>>> 12 urn:0-1-7-0-1186429255486 192.5.198.71:50100 1046329 1056826
> >>>>> 1060315 1060323 10497 3489 8 13994 0
> >>>>> 13 urn:0-1-9-0-1186429255502 192.5.198.71:50101 1046333 1059375
> >>>>> 1060589 1060596 13042 1214 7 14263 0
> >>>>> 14 urn:0-1-11-0-1186429255514 192.5.198.71:50101 1046338
> >>>>> 1060603 1060954 1061054 14265 351 100 14716 0
> >>>>> 15 urn:0-1-10-0-1186429255511 192.5.198.71:50100 1046336
> >>>>> 1060329 1061094 1061126 13993 765 32 14790 0
> >>>>> 16 urn:0-1-14-0-1186429255533 192.5.198.71:50100 1046691
> >>>>> 1061105 1065608 1065617 14414 4503 9 18926 0
> >>>>> 17 urn:0-1-13-0-1186429255535 192.5.198.71:50100 1046693
> >>>>> 1065622 1066307 1066315 18929 685 8 19622 0
> >>>>> 18 urn:0-1-12-0-1186429255524 192.5.198.71:50101 1046689
> >>>>> 1061045 1067540 1067563 14356 6495 23 20874 0
> >>>>> 19 urn:0-1-15-0-1186429255539 192.5.198.71:50100 1046695
> >>>>> 1066320 1069262 1069271 19625 2942 9 22576 0
> >>>>> 20 urn:0-1-16-0-1186429255543 192.5.198.71:50101 1046697
> >>>>> 1067551 1071003 1071011 20854 3452 8 24314 0
> >>>>> 21 urn:0-1-18-0-1186429255559 192.5.198.71:50101 1046700
> >>>>> 1071016 1071664 1071671 24316 648 7 24971 0
> >>>>> 22 urn:0-1-17-0-1186429255557 192.5.198.71:50100 1046698
> >>>>> 1069275 1071679 1071692 22577 2404 13 24994 0
> >>>>> 23 urn:0-1-19-0-1186429255565 192.5.198.71:50101 1046702
> >>>>> 1071687 1073978 1073988 24985 2291 10 27286 0
> >>>>> 24 urn:0-1-20-0-1186429255572 192.5.198.71:50101 1046706
> >>>>> 1073992 1075959 1075969 27286 1967 10 29263 0
> >>>>> 25 urn:0-1-21-0-1186429255567 192.5.198.71:50100 1046704
> >>>>> 1071699 1076704 1076713 24995 5005 9 30009 0
> >>>>> 26 urn:0-1-22-0-1186429255587 192.5.198.71:50101 1046708
> >>>>> 1075972 1077451 1077459 29264 1479 8 30751 0
> >>>>> 27 urn:0-1-23-0-1186429255595 192.5.198.71:50100 1046710
> >>>>> 1076717 1080157 1080165 30007 3440 8 33455 0
> >>>>> 28 urn:0-1-25-0-1186429255599 192.5.198.71:50101 1046712
> >>>>> 1077464 1080270 1080286 30752 2806 16 33574 0
> >>>>> 29 urn:0-1-24-0-1186429255601 192.5.198.71:50100 1046713
> >>>>> 1080170 1080611 1080619 33457 441 8 33906 0
> >>>>> 30 urn:0-1-26-0-1186429255613 192.5.198.71:50100 1046717
> >>>>> 1080624 1080973 1080983 33907 349 10 34266 0
> >>>>> 31 urn:0-1-28-0-1186429255611 192.5.198.71:50101 1046715
> >>>>> 1080281 1081405 1081413 33566 1124 8 34698 0
> >>>>> 32 urn:0-1-27-0-1186429255616 192.5.198.71:50100 1046719
> >>>>> 1080986 1082989 1082996 34267 2003 7 36277 0
> >>>>> 33 urn:0-1-30-0-1186429255635 192.5.198.71:50100 1046723
> >>>>> 1083002 1083370 1083378 36279 368 8 36655 0
> >>>>> 34 urn:0-1-29-0-1186429255622 192.5.198.71:50101 1046721
> >>>>> 1081417 1084830 1084837 34696 3413 7 38116 0
> >>>>> 35 urn:0-1-32-0-1186429255652 192.5.198.71:50101 1047082
> >>>>> 1084843 1085854 1085879 37761 1011 25 38797 0
> >>>>> 36 urn:0-1-34-0-1186429255654 192.5.198.71:50101 1047085
> >>>>> 1085865 1089502 1089511 38780 3637 9 42426 0
> >>>>> 37 urn:0-1-33-0-1186429255656 192.5.198.71:50101 1047087
> >>>>> 1089515 1089966 1089974 42428 451 8 42887 0
> >>>>> 38 urn:0-1-31-0-1186429255642 192.5.198.71:50100 1046725
> >>>>> 1083383 1091316 1091324 36658 7933 8 44599 0
> >>>>> 39 urn:0-1-36-0-1186429255664 192.5.198.71:50100 1047092
> >>>>> 1091329 1092042 1092049 44237 713 7 44957 0
> >>>>> 40 urn:0-1-38-0-1186429255673 192.5.198.71:50100 1047095
> >>>>> 1092055 1094242 1094249 44960 2187 7 47154 0
> >>>>> 41 urn:0-1-35-0-1186429255658 192.5.198.71:50101 1047090
> >>>>> 1089979 1094418 1094428 42889 4439 10 47338 0
> >>>>> 42 urn:0-1-40-0-1186429255696 192.5.198.71:50101 1047102
> >>>>> 1094433 1095082 1095089 47331 649 7 47987 0
> >>>>> 43 urn:0-1-41-0-1186429255692 192.5.198.71:50101 1047104
> >>>>> 1095095 1096846 1096853 47991 1751 7 49749 0
> >>>>> 44 urn:0-1-39-0-1186429255686 192.5.198.71:50100 1047100
> >>>>> 1094256 1098214 1098221 47156 3958 7 51121 0
> >>>>> 45 urn:0-1-42-0-1186429255700 192.5.198.71:50101 1047107
> >>>>> 1096859 1098627 1098637 49752 1768 10 51530 0
> >>>>> 46 urn:0-1-37-0-1186429255681 192.5.198.67:50100 1047097
> >>>>> 1094037 1098903 1098910 46940 4866 7 51813 0
> >>>>> 47 urn:0-1-50-0-1186429255749 192.5.198.67:50101 1047121
> >>>>> 1099192 1100210 1100246 52071 1018 36 53125 0
> >>>>> 48 urn:0-1-44-0-1186429255720 192.5.198.57:50101 1047111
> >>>>> 1097371 1100555 1100562 50260 3184 7 53451 0
> >>>>> 49 urn:0-1-43-0-1186429255705 192.5.198.66:50100 1047109
> >>>>> 1097135 1100896 1100904 50026 3761 8 53795 0
> >>>>> 50 urn:0-1-48-0-1186429255737 192.5.198.71:50101 1047117
> >>>>> 1098640 1101106 1101127 51523 2466 21 54010 0
> >>>>> 51 urn:0-1-51-0-1186429255755 192.5.198.55:50100 1047123
> >>>>> 1099965 1101217 1101224 52842 1252 7 54101 0
> >>>>> 52 urn:0-1-47-0-1186429255731 192.5.198.71:50100 1047115
> >>>>> 1098227 1101820 1101828 51112 3593 8 54713 0
> >>>>> 53 urn:0-1-45-0-1186429255723 192.5.198.57:50100 1047113
> >>>>> 1097375 1104132 1104139 50262 6757 7 57026 0
> >>>>> 54 urn:0-1-52-0-1186429255764 192.5.198.67:50101 1047125
> >>>>> 1100221 1106449 1106458 53096 6228 9 59333 0
> >>>>> 55 urn:0-1-46-0-1186429255743 192.5.198.67:50100 1047119
> >>>>> 1098916 1106473 1106481 51797 7557 8 59362 0
> >>>>> 56 urn:0-1-2-1-1186428881026 192.5.198.70:50101 563313 563384
> >>>>> 1207793 1207801 71 644409 8 644488 0
> >>>>> 57 urn:0-1-1-1-1186428881028 192.5.198.70:50100 563315 563413
> >>>>> 1216404 1216425 98 652991 21 653110 0
> >>>>>
> >>>>>
> >>>>>
> >>>>> Veronika Nefedova wrote:
> >>>>>> OK. There is something weird happening. I've got several such
> >>>>>> entries in my swift log:
> >>>>>>
> >>>>>> 2007-08-06 14:46:58,565 DEBUG vdl:execute2 Application
> >>>>>> exception: Task failed
> >>>>>> task:execute @ vdl-int.k, line: 332
> >>>>>> vdl:execute2 @ execute-default.k, line: 22
> >>>>>> vdl:execute @ MolDyn-244-loops.kml, line: 20
> >>>>>> antchmbr @ MolDyn-244-loops.kml, line: 2845
> >>>>>> vdl:mains @ MolDyn-244-loops.kml, line: 2267
> >>>>>>
> >>>>>>
> >>>>>> Looks like antechamber has failed (?). And the failure is only
> >>>>>> on a swfit side, it never made it across to Falcon (there are
> >>>>>> no remote directories created). But I see some of antechamber
> >>>>>> jobs have finished (in shared).
> >>>>>>
> >>>>>> Yuqing -- could the changes you've made be responsible for
> >>>>>> these failures (I do not see how it could though) ?
> >>>>>>
> >>>>>> Ioan, what do you see in your logs ion these tasks:
> >>>>>>
> >>>>>> 2007-08-06 14:46:58,555 DEBUG TaskImpl Task(type=1,
> >>>>>> identity=urn:0-1-56-0-1186429255786) setting status to Failed
> >>>>>> 2007-08-06 14:46:58,556 DEBUG TaskImpl Task(type=1,
> >>>>>> identity=urn:0-1-57-0-1186429255798) setting status to Failed
> >>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
> >>>>>> identity=urn:0-1-59-0-1186429255800) setting status to Failed
> >>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
> >>>>>> identity=urn:0-1-60-0-1186429255805) setting status to Failed
> >>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
> >>>>>> identity=urn:0-1-61-0-1186429255811) setting status to Failed
> >>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
> >>>>>> identity=urn:0-1-58-0-1186429255814) setting status to Failed
> >>>>>>
> >>>>>> Nika
> >>>>>>
> >>>>>> On Aug 6, 2007, at 2:29 PM, Ioan Raicu wrote:
> >>>>>>
> >>>>>>> OK!
> >>>>>>> Why don't we do one last run from my allocation, as
> >>>>>>> everything is set up already and ready to go! Make sure to
> >>>>>>> enable all debug logging. Falkon is up and running with all
> >>>>>>> debug enabled!
> >>>>>>>
> >>>>>>> Falkon location is unchanged from the last experiment.
> >>>>>>> Falkon Factory Service: http://tg-viz-login2:50010/wsrf/
> >>>>>>> services/GenericPortal/core/WS/GPFactoryService
> >>>>>>> Web Server (graphs): http://tg-viz-login2.uc.teragrid.org:
> >>>>>>> 51000/index.htm
> >>>>>>>
> >>>>>>> ANL/UC is not quite so idle as it was earlier, but I bet we
> >>>>>>> could still get 150~200 processors!
> >>>>>>>
> >>>>>>> Ioan
> >>>>>>>
> >>>>>>> Veronika Nefedova wrote:
> >>>>>>>> m050 and m179 finished just fine now via GRAM (thanks to
> >>>>>>>> Yuqing who fixed the m179 just in time!). We could start
> >>>>>>>> again the 244- molecule run to verify that nothing is wrong
> >>>>>>>> with the whole system.
> >>>>>>>>
> >>>>>>>> Nika
> >>>>>>>>
> >>>>>>>> On Aug 6, 2007, at 12:20 PM, Veronika Nefedova wrote:
> >>>>>>>>
> >>>>>>>>>
> >>>>>>>>> On Aug 6, 2007, at 11:51 AM, Ioan Raicu wrote:
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>> I started those 2 molecules via GRAM. I have no trust in
> >>>>>>>>> m179 finishing completely since I didn't change anything. I
> >>>>>>>>> hope for m050 to finish though...
> >>>>>>>>> You can watch the swift log on viper in ~nefedova/alamines/
> >>>>>>>>> MolDyn-2-loops-be9484k93kk21.log
> >>>>>>>>>
> >>>>>>>>> Nika
> >>>>>>>>>
> >>>>>>>>>> Then, let's try another run with 244 molecules soon, as
> >>>>>>>>>> most of ANL/UC is free!
> >>>>>>>>>>
> >>>>>>>>>> Ioan
> >>>>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>
> >>>>>>
> >>>>>>
> >>>>>
> >>>>
> >>>>
> >>> _______________________________________________
> >>> Swift-devel mailing list
> >>> Swift-devel at ci.uchicago.edu
> >>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
> >>>
> >>
> >
> > _______________________________________________
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> > http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
> >
>
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