[Swift-devel] Q about MolDyn
Ioan Raicu
iraicu at cs.uchicago.edu
Mon Aug 6 21:51:16 CDT 2007
I have 7959 jobs completed with an exit code of 0, no failed jobs! All
the Falkon logs point to the same 7959 number of jobs, and when they
were all completed, no new jobs came in from Swift...
How many jobs do you see submitted, and how many have been completed in
the Swift logs?
Everything looks 100% normal on Falkon's end.
Ioan
Veronika Nefedova wrote:
> Whats up now? Everything has stopped, no errors on swift site...
> Do you have any errors now?
>
> Nika
>
> On Aug 6, 2007, at 6:04 PM, Ioan Raicu wrote:
>
>> OK, I restarted Falkon as well as there were 12K jobs trying to go
>> through, and keeping the entire ANL/UC site busy, although there was
>> no Swift on the other end to pick up the notifications...
>>
>> here is the new info:
>>
>> Falkon Factory Service:
>> http://tg-viz-login2:50020/wsrf/services/GenericPortal/core/WS/GPFactoryService
>>
>> Web server: http://tg-viz-login2.uc.teragrid.org:51000/index.htm
>>
>> Note that I changed the port #, its now 50020, so don't forget to
>> change that before you start Swift...
>>
>> Ioan
>>
>> Veronika Nefedova wrote:
>>> OK. I accidentally closed viper window where I started the workflow.
>>> The workflow was started with & so it was supposed to stay up even
>>> if I exited the shell. But apparently it didn't!
>>>
>>> This is the last entry in the log:
>>>
>>> 2007-08-06 17:16:59,483 INFO ResourcePool Destroying remote service
>>> instance... dummy function, this doesn't really do anything...
>>>
>>> (and it doesn't change ever since).
>>>
>>> What went wrong ? Why closing the shell actually killed the job? (ps
>>> shows no swift job)
>>> I checked 'history' and in fact the job was started with &:
>>>
>>> 999 swift -tc.file tc-uc.data -sites.file sites-uc-64.xml -debug
>>> MolDyn-244-loops.swift &
>>>
>>> I'll restart the workflow in 30 mins or so (from home) again.
>>>
>>> Sigh...
>>>
>>> Nika
>>>
>>>
>>> On Aug 6, 2007, at 4:29 PM, Veronika Nefedova wrote:
>>>
>>>> Ioan, its all was due to NFS problems, I am convinced now...
>>>>
>>>> I restarted the run, the log is
>>>> ~nefedova/alamines/MolDyn-244-loops-hxl1glhtqsag0.log
>>>>
>>>> Nika
>>>>
>>>> On Aug 6, 2007, at 4:20 PM, Ioan Raicu wrote:
>>>>
>>>>> Just to debug further.... I picked out 1 task at random from the
>>>>> Swift log...
>>>>> iraicu at viper:/home/nefedova/alamines> cat
>>>>> MolDyn-244-loops-dbui34oxjr4j2.log | grep
>>>>> "urn:0-1-62-0-1186429258791"
>>>>> 2007-08-06 14:47:03,281 DEBUG TaskImpl Task(type=2,
>>>>> identity=urn:0-1-62-0-1186429258791) setting status to Submitted
>>>>> 2007-08-06 14:47:03,281 DEBUG TaskImpl Task(type=2,
>>>>> identity=urn:0-1-62-0-1186429258791) setting status to Active
>>>>> 2007-08-06 14:47:03,704 DEBUG TaskImpl Task(type=2,
>>>>> identity=urn:0-1-62-0-1186429258791) setting status to Failed
>>>>> Exception in getFile
>>>>>
>>>>> but in my log, it is nowhere to be found...
>>>>> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> cat
>>>>> GenericPortalWS_taskPerf.txt | grep "urn:0-1-62-0-1186429258791"
>>>>>
>>>>> What does "setting status to Failed Exception in getFile" mean?
>>>>> Could this mean that it failed on the data staging part, and that
>>>>> it never made it to Falkon?
>>>>>
>>>>> BTW, it lloks as if there were really 539 jobs submitted...
>>>>>
>>>>> iraicu at viper:/home/nefedova/alamines> grep "Submitted"
>>>>> MolDyn-244-loops-dbui34oxjr4j2.log | wc
>>>>> 539 5390 62835
>>>>>
>>>>> but again, only 57 made it to Falkon, and there were no exceptions
>>>>> thrown anywhere to indicate that something unusual happened.
>>>>>
>>>>> Ioan
>>>>>
>>>>> Ioan Raicu wrote:
>>>>>> Falkon only has 57 tasks received, here they are:
>>>>>> tg-viz-login.uc.teragrid.org:/home/iraicu/java/Falkon_v0.8.1/service/logs/GenericPortalWS.txt.0.summary
>>>>>>
>>>>>>
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> pre_ch-vsk58efi stdout.txt stderr.txt . ./m179.mol2 ./m050.mol2
>>>>>> m179_am1 m050_am1
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/pre-antch.pl
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-xsk58efi stdout.txt stderr.txt m179_am1 m179_am1.rtf
>>>>>> m179_am1.crd m179_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m179_am1 -fi mol2 -rn m179 -o m179_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-ysk58efi stdout.txt stderr.txt m050_am1 m050_am1.rtf
>>>>>> m050_am1.crd m050_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m050_am1 -fi mol2 -rn m050 -o m050_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> chrm-0tk58efi equil_solv.out_m050 stderr.txt equil_solv.inp
>>>>>> parm03_gaff_all.rtf parm03_gaffnb_all.prm equil_solv.inp
>>>>>> m050_am1.rtf m050_am1.prm m050_am1.crd water_400.crd
>>>>>> equil_solv.out_m050 solv_m050.psf solv_m050_eq.crd solv_m050.rst
>>>>>> solv_m050.trj solv_m050_min.crd
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/charmm.sh system:solv_m050
>>>>>> title:solv stitle:m050 rtffile:parm03_gaff_all.rtf
>>>>>> paramfile:parm03_gaffnb_all.prm gaff:m050_am1 nwater:400
>>>>>> ligcrd:lyz rforce:0 iseed:3131887 rwater:15 nstep:10000
>>>>>> minstep:100 skipstep:100 startstep:10000
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> chrm-zsk58efi equil_solv.out_m179 stderr.txt equil_solv.inp
>>>>>> parm03_gaff_all.rtf parm03_gaffnb_all.prm equil_solv.inp
>>>>>> m179_am1.rtf m179_am1.prm m179_am1.crd water_400.crd
>>>>>> equil_solv.out_m179 solv_m179.psf solv_m179_eq.crd solv_m179.rst
>>>>>> solv_m179.trj solv_m179_min.crd
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/charmm.sh system:solv_m179
>>>>>> title:solv stitle:m179 rtffile:parm03_gaff_all.rtf
>>>>>> paramfile:parm03_gaffnb_all.prm gaff:m179_am1 nwater:400
>>>>>> ligcrd:lyz rforce:0 iseed:3131887 rwater:15 nstep:10000
>>>>>> minstep:100 skipstep:100 startstep:10000
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> pre_ch-38lc8efi stdout.txt stderr.txt . ./m197.mol2 ./m129.mol2
>>>>>> ./m069.mol2 ./m163.mol2 ./m128.mol2 ./m035.mol2 ./m070.mol2
>>>>>> ./m221.mol2 ./m162.mol2 ./m198.mol2 ./m034.mol2 ./m001.mol2
>>>>>> ./m220.mol2 ./m033.mol2 ./m161.mol2 ./m032.mol2 ./m160.mol2
>>>>>> ./m130.mol2 ./m071.mol2 ./m002.mol2 ./m199.mol2 ./m175.mol2
>>>>>> ./m234.mol2 ./m048.mol2 ./m107.mol2 ./m047.mol2 ./m106.mol2
>>>>>> ./m124.mol2 ./m193.mol2 ./m225.mol2 ./m066.mol2 ./m125.mol2
>>>>>> ./m176.mol2 ./m194.mol2 ./m224.mol2 ./m235.mol2 ./m067.mol2
>>>>>> ./m165.mol2 ./m049.mol2 ./m126.mol2 ./m166.mol2 ./m108.mol2
>>>>>> ./m195.mol2 ./m038.mol2 ./m059.mol2 ./m036.mol2 ./m186.mol2
>>>>>> ./m164.mol2 ./m117.mol2 ./m223.mol2 ./m058.mol2 ./m037.mol2
>>>>>> ./m188.mol2 ./m068.mol2 ./m119.mol2 ./m187.mol2 ./m196.mol2
>>>>>> ./m118.mol2 ./m127.mol2 ./m222.mol2 ./m189.mol2 ./m060.mol2
>>>>>> ./m236.mol2 ./m109.mol2 ./m177.mol2 ./m050.mol2 ./m179.mol2
>>>>>> ./m178.mol2 ./m123.mol2 ./m237.mol2 ./m110.mol2 ./m191.mol2
>>>>>> ./m100.mol2 ./m064.mol2 ./m041.mol2 ./m238.mol2 ./m063.mol2
>>>>>> ./m228.mol2 ./m051.mol2 ./m122.mol2 ./m169.mol2 ./m121.mol2
>>>>>> ./m190.mol2 ./m120.mol2 ./m062.mol2 ./m065.mol2 ./m039.mol2
>>>>>> ./m192.mol2 ./m167.mol2 ./m227.mol2 ./m040.mol2 ./m226.mol2
>>>>>> ./m168.mol2 ./m239.mol2 ./m052.mol2 ./m111.mol2 ./m180.mol2
>>>>>> ./m053.mol2 ./m112.mol2 ./m181.mol2 ./m240.mol2 ./m054.mol2
>>>>>> ./m044.mol2 ./m113.mol2 ./m230.mol2 ./m103.mol2 ./m229.mol2
>>>>>> ./m061.mol2 ./m042.mol2 ./m101.mol2 ./m170.mol2 ./m043.mol2
>>>>>> ./m102.mol2 ./m171.mol2 ./m151.mol2 ./m083.mol2 ./m210.mol2
>>>>>> ./m014.mol2 ./m023.mol2 ./m200.mol2 ./m092.mol2 ./m091.mol2
>>>>>> ./m150.mol2 ./m209.mol2 ./m022.mol2 ./m024.mol2 ./m093.mol2
>>>>>> ./m015.mol2 ./m084.mol2 ./m142.mol2 ./m201.mol2 ./m016.mol2
>>>>>> ./m085.mol2 ./m143.mol2 ./m202.mol2 ./m010.mol2 ./m212.mol2
>>>>>> ./m138.mol2 ./m026.mol2 ./m011.mol2 ./m095.mol2 ./m139.mol2
>>>>>> ./m154.mol2 ./m211.mol2 ./m025.mol2 ./m094.mol2 ./m153.mol2
>>>>>> ./m213.mol2 ./m080.mol2 ./m012.mol2 ./m152.mol2 ./m081.mol2
>>>>>> ./m140.mol2 ./m013.mol2 ./m082.mol2 ./m141.mol2 ./m028.mol2
>>>>>> ./m097.mol2 ./m155.mol2 ./m008.mol2 ./m214.mol2 ./m135.mol2
>>>>>> ./m029.mol2 ./m076.mol2 ./m098.mol2 ./m007.mol2 ./m156.mol2
>>>>>> ./m134.mol2 ./m215.mol2 ./m137.mol2 ./m079.mol2 ./m009.mol2
>>>>>> ./m078.mol2 ./m077.mol2 ./m096.mol2 ./m136.mol2 ./m027.mol2
>>>>>> ./m132.mol2 ./m158.mol2 ./m073.mol2 ./m217.mol2 ./m030.mol2
>>>>>> ./m159.mol2 ./m072.mol2 ./m218.mol2 ./m003.mol2 ./m031.mol2
>>>>>> ./m004.mol2 ./m219.mol2 ./m131.mol2 ./m074.mol2 ./m133.mol2
>>>>>> ./m006.mol2 ./m075.mol2 ./m157.mol2 ./m099.mol2 ./m005.mol2
>>>>>> ./m216.mol2 ./m090.mol2 ./m021.mol2 ./m208.mol2 ./m149.mol2
>>>>>> ./m020.mol2 ./m207.mol2 ./m148.mol2 ./m088.mol2 ./m089.mol2
>>>>>> ./m206.mol2 ./m147.mol2 ./m019.mol2 ./m205.mol2 ./m146.mol2
>>>>>> ./m087.mol2 ./m018.mol2 ./m204.mol2 ./m145.mol2 ./m086.mol2
>>>>>> ./m017.mol2 ./m144.mol2 ./m203.mol2 ./m057.mol2 ./m116.mol2
>>>>>> ./m232.mol2 ./m173.mol2 ./m105.mol2 ./m046.mol2 ./m231.mol2
>>>>>> ./m172.mol2 ./m104.mol2 ./m045.mol2 ./m174.mol2 ./m233.mol2
>>>>>> ./m244.mol2 ./m185.mol2 ./m182.mol2 ./m243.mol2 ./m055.mol2
>>>>>> ./m241.mol2 ./m183.mol2 ./m114.mol2 ./m056.mol2 ./m242.mol2
>>>>>> ./m184.mol2 ./m115.mol2 m197_am1 m129_am1 m069_am1 m163_am1
>>>>>> m128_am1 m035_am1 m070_am1 m221_am1 m162_am1 m198_am1 m034_am1
>>>>>> m001_am1 m220_am1 m033_am1 m161_am1 m032_am1 m160_am1 m130_am1
>>>>>> m071_am1 m002_am1 m199_am1 m175_am1 m234_am1 m048_am1 m107_am1
>>>>>> m047_am1 m106_am1 m124_am1 m193_am1 m225_am1 m066_am1 m125_am1
>>>>>> m176_am1 m194_am1 m224_am1 m235_am1 m067_am1 m165_am1 m049_am1
>>>>>> m126_am1 m166_am1 m108_am1 m195_am1 m038_am1 m059_am1 m036_am1
>>>>>> m186_am1 m164_am1 m223_am1 m117_am1 m037_am1 m058_am1 m068_am1
>>>>>> m188_am1 m119_am1 m196_am1 m187_am1 m222_am1 m127_am1 m118_am1
>>>>>> m189_am1 m060_am1 m236_am1 m109_am1 m177_am1 m050_am1 m179_am1
>>>>>> m123_am1 m178_am1 m237_am1 m100_am1 m191_am1 m110_am1 m041_am1
>>>>>> m064_am1 m228_am1 m063_am1 m238_am1 m169_am1 m122_am1 m051_am1
>>>>>> m121_am1 m190_am1 m120_am1 m062_am1 m039_am1 m065_am1 m167_am1
>>>>>> m192_am1 m227_am1 m040_am1 m226_am1 m168_am1 m239_am1 m052_am1
>>>>>> m111_am1 m180_am1 m053_am1 m112_am1 m181_am1 m240_am1 m054_am1
>>>>>> m044_am1 m113_am1 m230_am1 m103_am1 m229_am1 m061_am1 m042_am1
>>>>>> m101_am1 m170_am1 m043_am1 m102_am1 m171_am1 m151_am1 m083_am1
>>>>>> m210_am1 m014_am1 m023_am1 m200_am1 m092_am1 m091_am1 m150_am1
>>>>>> m209_am1 m022_am1 m024_am1 m093_am1 m015_am1 m084_am1 m142_am1
>>>>>> m201_am1 m016_am1 m085_am1 m143_am1 m202_am1 m010_am1 m212_am1
>>>>>> m138_am1 m026_am1 m011_am1 m095_am1 m139_am1 m154_am1 m211_am1
>>>>>> m025_am1 m094_am1 m153_am1 m213_am1 m080_am1 m012_am1 m152_am1
>>>>>> m081_am1 m140_am1 m013_am1 m082_am1 m141_am1 m028_am1 m097_am1
>>>>>> m155_am1 m008_am1 m214_am1 m135_am1 m029_am1 m076_am1 m098_am1
>>>>>> m007_am1 m156_am1 m134_am1 m215_am1 m137_am1 m079_am1 m009_am1
>>>>>> m078_am1 m077_am1 m096_am1 m136_am1 m027_am1 m132_am1 m158_am1
>>>>>> m073_am1 m217_am1 m030_am1 m159_am1 m072_am1 m218_am1 m003_am1
>>>>>> m031_am1 m004_am1 m219_am1 m131_am1 m074_am1 m133_am1 m006_am1
>>>>>> m075_am1 m157_am1 m099_am1 m216_am1 m005_am1 m090_am1 m021_am1
>>>>>> m208_am1 m149_am1 m020_am1 m207_am1 m148_am1 m089_am1 m088_am1
>>>>>> m206_am1 m147_am1 m019_am1 m205_am1 m146_am1 m087_am1 m018_am1
>>>>>> m204_am1 m145_am1 m086_am1 m017_am1 m144_am1 m203_am1 m057_am1
>>>>>> m116_am1 m232_am1 m173_am1 m105_am1 m046_am1 m231_am1 m172_am1
>>>>>> m104_am1 m045_am1 m174_am1 m233_am1 m244_am1 m185_am1 m182_am1
>>>>>> m243_am1 m055_am1 m241_am1 m183_am1 m114_am1 m056_am1 m242_am1
>>>>>> m184_am1 m115_am1
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/pre-antch.pl
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-58lc8efi stdout.txt stderr.txt m197_am1 m197_am1.rtf
>>>>>> m197_am1.crd m197_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m197_am1 -fi mol2 -rn m197 -o m197_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-48lc8efi stdout.txt stderr.txt m129_am1 m129_am1.rtf
>>>>>> m129_am1.crd m129_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m129_am1 -fi mol2 -rn m129 -o m129_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-68lc8efi stdout.txt stderr.txt m069_am1 m069_am1.rtf
>>>>>> m069_am1.crd m069_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m069_am1 -fi mol2 -rn m069 -o m069_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-88lc8efi stdout.txt stderr.txt m163_am1 m163_am1.rtf
>>>>>> m163_am1.crd m163_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m163_am1 -fi mol2 -rn m163 -o m163_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-78lc8efi stdout.txt stderr.txt m128_am1 m128_am1.rtf
>>>>>> m128_am1.crd m128_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m128_am1 -fi mol2 -rn m128 -o m128_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-98lc8efi stdout.txt stderr.txt m035_am1 m035_am1.rtf
>>>>>> m035_am1.crd m035_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m035_am1 -fi mol2 -rn m035 -o m035_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-a8lc8efi stdout.txt stderr.txt m070_am1 m070_am1.rtf
>>>>>> m070_am1.crd m070_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m070_am1 -fi mol2 -rn m070 -o m070_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-b8lc8efi stdout.txt stderr.txt m221_am1 m221_am1.rtf
>>>>>> m221_am1.crd m221_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m221_am1 -fi mol2 -rn m221 -o m221_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-c8lc8efi stdout.txt stderr.txt m162_am1 m162_am1.rtf
>>>>>> m162_am1.crd m162_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m162_am1 -fi mol2 -rn m162 -o m162_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-d8lc8efi stdout.txt stderr.txt m198_am1 m198_am1.rtf
>>>>>> m198_am1.crd m198_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m198_am1 -fi mol2 -rn m198 -o m198_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-e8lc8efi stdout.txt stderr.txt m034_am1 m034_am1.rtf
>>>>>> m034_am1.crd m034_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m034_am1 -fi mol2 -rn m034 -o m034_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-f8lc8efi stdout.txt stderr.txt m001_am1 m001_am1.rtf
>>>>>> m001_am1.crd m001_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m001_am1 -fi mol2 -rn m001 -o m001_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-h8lc8efi stdout.txt stderr.txt m033_am1 m033_am1.rtf
>>>>>> m033_am1.crd m033_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m033_am1 -fi mol2 -rn m033 -o m033_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-g8lc8efi stdout.txt stderr.txt m220_am1 m220_am1.rtf
>>>>>> m220_am1.crd m220_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m220_am1 -fi mol2 -rn m220 -o m220_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-i8lc8efi stdout.txt stderr.txt m161_am1 m161_am1.rtf
>>>>>> m161_am1.crd m161_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m161_am1 -fi mol2 -rn m161 -o m161_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-j8lc8efi stdout.txt stderr.txt m032_am1 m032_am1.rtf
>>>>>> m032_am1.crd m032_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m032_am1 -fi mol2 -rn m032 -o m032_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-k8lc8efi stdout.txt stderr.txt m160_am1 m160_am1.rtf
>>>>>> m160_am1.crd m160_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m160_am1 -fi mol2 -rn m160 -o m160_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-l8lc8efi stdout.txt stderr.txt m130_am1 m130_am1.rtf
>>>>>> m130_am1.crd m130_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m130_am1 -fi mol2 -rn m130 -o m130_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-m8lc8efi stdout.txt stderr.txt m071_am1 m071_am1.rtf
>>>>>> m071_am1.crd m071_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m071_am1 -fi mol2 -rn m071 -o m071_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-o8lc8efi stdout.txt stderr.txt m199_am1 m199_am1.rtf
>>>>>> m199_am1.crd m199_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m199_am1 -fi mol2 -rn m199 -o m199_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-n8lc8efi stdout.txt stderr.txt m002_am1 m002_am1.rtf
>>>>>> m002_am1.crd m002_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m002_am1 -fi mol2 -rn m002 -o m002_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-p8lc8efi stdout.txt stderr.txt m175_am1 m175_am1.rtf
>>>>>> m175_am1.crd m175_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m175_am1 -fi mol2 -rn m175 -o m175_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-q8lc8efi stdout.txt stderr.txt m234_am1 m234_am1.rtf
>>>>>> m234_am1.crd m234_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m234_am1 -fi mol2 -rn m234 -o m234_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-s8lc8efi stdout.txt stderr.txt m107_am1 m107_am1.rtf
>>>>>> m107_am1.crd m107_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m107_am1 -fi mol2 -rn m107 -o m107_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-r8lc8efi stdout.txt stderr.txt m048_am1 m048_am1.rtf
>>>>>> m048_am1.crd m048_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m048_am1 -fi mol2 -rn m048 -o m048_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-v8lc8efi stdout.txt stderr.txt m124_am1 m124_am1.rtf
>>>>>> m124_am1.crd m124_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m124_am1 -fi mol2 -rn m124 -o m124_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-t8lc8efi stdout.txt stderr.txt m047_am1 m047_am1.rtf
>>>>>> m047_am1.crd m047_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m047_am1 -fi mol2 -rn m047 -o m047_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-u8lc8efi stdout.txt stderr.txt m106_am1 m106_am1.rtf
>>>>>> m106_am1.crd m106_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m106_am1 -fi mol2 -rn m106 -o m106_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-x8lc8efi stdout.txt stderr.txt m193_am1 m193_am1.rtf
>>>>>> m193_am1.crd m193_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m193_am1 -fi mol2 -rn m193 -o m193_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-y8lc8efi stdout.txt stderr.txt m225_am1 m225_am1.rtf
>>>>>> m225_am1.crd m225_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m225_am1 -fi mol2 -rn m225 -o m225_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-z8lc8efi stdout.txt stderr.txt m066_am1 m066_am1.rtf
>>>>>> m066_am1.crd m066_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m066_am1 -fi mol2 -rn m066 -o m066_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-09lc8efi stdout.txt stderr.txt m125_am1 m125_am1.rtf
>>>>>> m125_am1.crd m125_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m125_am1 -fi mol2 -rn m125 -o m125_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-29lc8efi stdout.txt stderr.txt m194_am1 m194_am1.rtf
>>>>>> m194_am1.crd m194_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m194_am1 -fi mol2 -rn m194 -o m194_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-19lc8efi stdout.txt stderr.txt m176_am1 m176_am1.rtf
>>>>>> m176_am1.crd m176_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m176_am1 -fi mol2 -rn m176 -o m176_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-39lc8efi stdout.txt stderr.txt m224_am1 m224_am1.rtf
>>>>>> m224_am1.crd m224_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m224_am1 -fi mol2 -rn m224 -o m224_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-49lc8efi stdout.txt stderr.txt m235_am1 m235_am1.rtf
>>>>>> m235_am1.crd m235_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m235_am1 -fi mol2 -rn m235 -o m235_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-69lc8efi stdout.txt stderr.txt m165_am1 m165_am1.rtf
>>>>>> m165_am1.crd m165_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m165_am1 -fi mol2 -rn m165 -o m165_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-59lc8efi stdout.txt stderr.txt m067_am1 m067_am1.rtf
>>>>>> m067_am1.crd m067_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m067_am1 -fi mol2 -rn m067 -o m067_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-79lc8efi stdout.txt stderr.txt m049_am1 m049_am1.rtf
>>>>>> m049_am1.crd m049_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m049_am1 -fi mol2 -rn m049 -o m049_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-89lc8efi stdout.txt stderr.txt m126_am1 m126_am1.rtf
>>>>>> m126_am1.crd m126_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m126_am1 -fi mol2 -rn m126 -o m126_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-99lc8efi stdout.txt stderr.txt m166_am1 m166_am1.rtf
>>>>>> m166_am1.crd m166_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m166_am1 -fi mol2 -rn m166 -o m166_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-a9lc8efi stdout.txt stderr.txt m108_am1 m108_am1.rtf
>>>>>> m108_am1.crd m108_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m108_am1 -fi mol2 -rn m108 -o m108_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-b9lc8efi stdout.txt stderr.txt m195_am1 m195_am1.rtf
>>>>>> m195_am1.crd m195_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m195_am1 -fi mol2 -rn m195 -o m195_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-d9lc8efi stdout.txt stderr.txt m038_am1 m038_am1.rtf
>>>>>> m038_am1.crd m038_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m038_am1 -fi mol2 -rn m038 -o m038_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-c9lc8efi stdout.txt stderr.txt m059_am1 m059_am1.rtf
>>>>>> m059_am1.crd m059_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m059_am1 -fi mol2 -rn m059 -o m059_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-e9lc8efi stdout.txt stderr.txt m186_am1 m186_am1.rtf
>>>>>> m186_am1.crd m186_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m186_am1 -fi mol2 -rn m186 -o m186_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-f9lc8efi stdout.txt stderr.txt m164_am1 m164_am1.rtf
>>>>>> m164_am1.crd m164_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m164_am1 -fi mol2 -rn m164 -o m164_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-h9lc8efi stdout.txt stderr.txt m036_am1 m036_am1.rtf
>>>>>> m036_am1.crd m036_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m036_am1 -fi mol2 -rn m036 -o m036_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-g9lc8efi stdout.txt stderr.txt m223_am1 m223_am1.rtf
>>>>>> m223_am1.crd m223_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m223_am1 -fi mol2 -rn m223 -o m223_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-j9lc8efi stdout.txt stderr.txt m058_am1 m058_am1.rtf
>>>>>> m058_am1.crd m058_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m058_am1 -fi mol2 -rn m058 -o m058_am1 -fo charmm -c bcc
>>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/wrapper.sh
>>>>>> antch-k9lc8efi stdout.txt stderr.txt m037_am1 m037_am1.rtf
>>>>>> m037_am1.crd m037_am1.prm
>>>>>> /disks/scratchgpfs1/iraicu/ModLyn/bin/antechamber.sh -s 2 -i
>>>>>> m037_am1 -fi mol2 -rn m037 -o m037_am1 -fo charmm -c bcc
>>>>>>
>>>>>>
>>>>>>
>>>>>> Veronika Nefedova wrote:
>>>>>>> Swift thinks that it sent 248 jobs.
>>>>>>>
>>>>>>> nefedova at viper:~/alamines> grep "Running job "
>>>>>>> MolDyn-244-loops-dbui34oxjr4j2.log | wc
>>>>>>> 248 6931 56718
>>>>>>> nefedova at viper:~/alamines>
>>>>>>>
>>>>>>> On Aug 6, 2007, at 3:27 PM, Ioan Raicu wrote:
>>>>>>>
>>>>>>>> Everything is idle, there is no work to be done...
>>>>>>>>
>>>>>>>> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> tail
>>>>>>>> GenericPortalWS_perf_per_sec.txt
>>>>>>>> 3510.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3511.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3512.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3513.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3514.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3515.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3516.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3517.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3518.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>> 3519.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>>
>>>>>>>> 24 workers are registered but idle.... queue length 0, 57 jobs
>>>>>>>> completed.
>>>>>>>>
>>>>>>>> Also, see below all 57 jobs, they all finished with an exit
>>>>>>>> code of 0, in other words succesfully! How many jobs does
>>>>>>>> Swift think it sent?
>>>>>>>>
>>>>>>>> Ioan
>>>>>>>>
>>>>>>>> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> cat
>>>>>>>> GenericPortalWS_taskPerf.txt
>>>>>>>> //taskNum taskID workerID startTimeStamp execTimeStamp
>>>>>>>> resultsQueueTimeStamp endTimeStamp waitQueueTime ex
>>>>>>>> ecTime resultsQueueTime totalTime exitCode
>>>>>>>> 1 urn:0-0-1186428880921 192.5.198.70:50100 510496 560276 560614
>>>>>>>> 560629 49780 338 15 50133 0
>>>>>>>> 2 urn:0-1-1-0-1186428880939 192.5.198.70:50101 560984 561200
>>>>>>>> 561899 561909 216 699 10 925 0
>>>>>>>> 3 urn:0-1-2-0-1186428880941 192.5.198.70:50100 560991 561373
>>>>>>>> 562150 562159 382 777 9 1168 0
>>>>>>>> 4 urn:0-0-1186429254652 192.5.198.71:50100 972312 1034716
>>>>>>>> 1044916 1044926 62404 10200 10 72614 0
>>>>>>>> 5 urn:0-1-2-0-1186429255467 192.5.198.71:50101 1046318 1046453
>>>>>>>> 1047038 1047067 135 585 29 749 0
>>>>>>>> 6 urn:0-1-1-0-1186429255461 192.5.198.71:50100 1046315 1046429
>>>>>>>> 1053072 1053080 114 6643 8 6765 0
>>>>>>>> 7 urn:0-1-3-0-1186429255469 192.5.198.71:50101 1046320 1047051
>>>>>>>> 1054256 1054290 731 7205 34 7970 0
>>>>>>>> 8 urn:0-1-5-0-1186429255481 192.5.198.71:50101 1046324 1054267
>>>>>>>> 1054570 1054579 7943 303 9 8255 0
>>>>>>>> 9 urn:0-1-4-0-1186429255479 192.5.198.71:50100 1046322 1053087
>>>>>>>> 1056811 1056819 6765 3724 8 10497 0
>>>>>>>> 10 urn:0-1-6-0-1186429255484 192.5.198.71:50101 1046326 1054583
>>>>>>>> 1058691 1058719 8257 4108 28 12393 0
>>>>>>>> 11 urn:0-1-8-0-1186429255495 192.5.198.71:50101 1046331 1058704
>>>>>>>> 1059363 1059385 12373 659 22 13054 0
>>>>>>>> 12 urn:0-1-7-0-1186429255486 192.5.198.71:50100 1046329 1056826
>>>>>>>> 1060315 1060323 10497 3489 8 13994 0
>>>>>>>> 13 urn:0-1-9-0-1186429255502 192.5.198.71:50101 1046333 1059375
>>>>>>>> 1060589 1060596 13042 1214 7 14263 0
>>>>>>>> 14 urn:0-1-11-0-1186429255514 192.5.198.71:50101 1046338
>>>>>>>> 1060603 1060954 1061054 14265 351 100 14716 0
>>>>>>>> 15 urn:0-1-10-0-1186429255511 192.5.198.71:50100 1046336
>>>>>>>> 1060329 1061094 1061126 13993 765 32 14790 0
>>>>>>>> 16 urn:0-1-14-0-1186429255533 192.5.198.71:50100 1046691
>>>>>>>> 1061105 1065608 1065617 14414 4503 9 18926 0
>>>>>>>> 17 urn:0-1-13-0-1186429255535 192.5.198.71:50100 1046693
>>>>>>>> 1065622 1066307 1066315 18929 685 8 19622 0
>>>>>>>> 18 urn:0-1-12-0-1186429255524 192.5.198.71:50101 1046689
>>>>>>>> 1061045 1067540 1067563 14356 6495 23 20874 0
>>>>>>>> 19 urn:0-1-15-0-1186429255539 192.5.198.71:50100 1046695
>>>>>>>> 1066320 1069262 1069271 19625 2942 9 22576 0
>>>>>>>> 20 urn:0-1-16-0-1186429255543 192.5.198.71:50101 1046697
>>>>>>>> 1067551 1071003 1071011 20854 3452 8 24314 0
>>>>>>>> 21 urn:0-1-18-0-1186429255559 192.5.198.71:50101 1046700
>>>>>>>> 1071016 1071664 1071671 24316 648 7 24971 0
>>>>>>>> 22 urn:0-1-17-0-1186429255557 192.5.198.71:50100 1046698
>>>>>>>> 1069275 1071679 1071692 22577 2404 13 24994 0
>>>>>>>> 23 urn:0-1-19-0-1186429255565 192.5.198.71:50101 1046702
>>>>>>>> 1071687 1073978 1073988 24985 2291 10 27286 0
>>>>>>>> 24 urn:0-1-20-0-1186429255572 192.5.198.71:50101 1046706
>>>>>>>> 1073992 1075959 1075969 27286 1967 10 29263 0
>>>>>>>> 25 urn:0-1-21-0-1186429255567 192.5.198.71:50100 1046704
>>>>>>>> 1071699 1076704 1076713 24995 5005 9 30009 0
>>>>>>>> 26 urn:0-1-22-0-1186429255587 192.5.198.71:50101 1046708
>>>>>>>> 1075972 1077451 1077459 29264 1479 8 30751 0
>>>>>>>> 27 urn:0-1-23-0-1186429255595 192.5.198.71:50100 1046710
>>>>>>>> 1076717 1080157 1080165 30007 3440 8 33455 0
>>>>>>>> 28 urn:0-1-25-0-1186429255599 192.5.198.71:50101 1046712
>>>>>>>> 1077464 1080270 1080286 30752 2806 16 33574 0
>>>>>>>> 29 urn:0-1-24-0-1186429255601 192.5.198.71:50100 1046713
>>>>>>>> 1080170 1080611 1080619 33457 441 8 33906 0
>>>>>>>> 30 urn:0-1-26-0-1186429255613 192.5.198.71:50100 1046717
>>>>>>>> 1080624 1080973 1080983 33907 349 10 34266 0
>>>>>>>> 31 urn:0-1-28-0-1186429255611 192.5.198.71:50101 1046715
>>>>>>>> 1080281 1081405 1081413 33566 1124 8 34698 0
>>>>>>>> 32 urn:0-1-27-0-1186429255616 192.5.198.71:50100 1046719
>>>>>>>> 1080986 1082989 1082996 34267 2003 7 36277 0
>>>>>>>> 33 urn:0-1-30-0-1186429255635 192.5.198.71:50100 1046723
>>>>>>>> 1083002 1083370 1083378 36279 368 8 36655 0
>>>>>>>> 34 urn:0-1-29-0-1186429255622 192.5.198.71:50101 1046721
>>>>>>>> 1081417 1084830 1084837 34696 3413 7 38116 0
>>>>>>>> 35 urn:0-1-32-0-1186429255652 192.5.198.71:50101 1047082
>>>>>>>> 1084843 1085854 1085879 37761 1011 25 38797 0
>>>>>>>> 36 urn:0-1-34-0-1186429255654 192.5.198.71:50101 1047085
>>>>>>>> 1085865 1089502 1089511 38780 3637 9 42426 0
>>>>>>>> 37 urn:0-1-33-0-1186429255656 192.5.198.71:50101 1047087
>>>>>>>> 1089515 1089966 1089974 42428 451 8 42887 0
>>>>>>>> 38 urn:0-1-31-0-1186429255642 192.5.198.71:50100 1046725
>>>>>>>> 1083383 1091316 1091324 36658 7933 8 44599 0
>>>>>>>> 39 urn:0-1-36-0-1186429255664 192.5.198.71:50100 1047092
>>>>>>>> 1091329 1092042 1092049 44237 713 7 44957 0
>>>>>>>> 40 urn:0-1-38-0-1186429255673 192.5.198.71:50100 1047095
>>>>>>>> 1092055 1094242 1094249 44960 2187 7 47154 0
>>>>>>>> 41 urn:0-1-35-0-1186429255658 192.5.198.71:50101 1047090
>>>>>>>> 1089979 1094418 1094428 42889 4439 10 47338 0
>>>>>>>> 42 urn:0-1-40-0-1186429255696 192.5.198.71:50101 1047102
>>>>>>>> 1094433 1095082 1095089 47331 649 7 47987 0
>>>>>>>> 43 urn:0-1-41-0-1186429255692 192.5.198.71:50101 1047104
>>>>>>>> 1095095 1096846 1096853 47991 1751 7 49749 0
>>>>>>>> 44 urn:0-1-39-0-1186429255686 192.5.198.71:50100 1047100
>>>>>>>> 1094256 1098214 1098221 47156 3958 7 51121 0
>>>>>>>> 45 urn:0-1-42-0-1186429255700 192.5.198.71:50101 1047107
>>>>>>>> 1096859 1098627 1098637 49752 1768 10 51530 0
>>>>>>>> 46 urn:0-1-37-0-1186429255681 192.5.198.67:50100 1047097
>>>>>>>> 1094037 1098903 1098910 46940 4866 7 51813 0
>>>>>>>> 47 urn:0-1-50-0-1186429255749 192.5.198.67:50101 1047121
>>>>>>>> 1099192 1100210 1100246 52071 1018 36 53125 0
>>>>>>>> 48 urn:0-1-44-0-1186429255720 192.5.198.57:50101 1047111
>>>>>>>> 1097371 1100555 1100562 50260 3184 7 53451 0
>>>>>>>> 49 urn:0-1-43-0-1186429255705 192.5.198.66:50100 1047109
>>>>>>>> 1097135 1100896 1100904 50026 3761 8 53795 0
>>>>>>>> 50 urn:0-1-48-0-1186429255737 192.5.198.71:50101 1047117
>>>>>>>> 1098640 1101106 1101127 51523 2466 21 54010 0
>>>>>>>> 51 urn:0-1-51-0-1186429255755 192.5.198.55:50100 1047123
>>>>>>>> 1099965 1101217 1101224 52842 1252 7 54101 0
>>>>>>>> 52 urn:0-1-47-0-1186429255731 192.5.198.71:50100 1047115
>>>>>>>> 1098227 1101820 1101828 51112 3593 8 54713 0
>>>>>>>> 53 urn:0-1-45-0-1186429255723 192.5.198.57:50100 1047113
>>>>>>>> 1097375 1104132 1104139 50262 6757 7 57026 0
>>>>>>>> 54 urn:0-1-52-0-1186429255764 192.5.198.67:50101 1047125
>>>>>>>> 1100221 1106449 1106458 53096 6228 9 59333 0
>>>>>>>> 55 urn:0-1-46-0-1186429255743 192.5.198.67:50100 1047119
>>>>>>>> 1098916 1106473 1106481 51797 7557 8 59362 0
>>>>>>>> 56 urn:0-1-2-1-1186428881026 192.5.198.70:50101 563313 563384
>>>>>>>> 1207793 1207801 71 644409 8 644488 0
>>>>>>>> 57 urn:0-1-1-1-1186428881028 192.5.198.70:50100 563315 563413
>>>>>>>> 1216404 1216425 98 652991 21 653110 0
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> Veronika Nefedova wrote:
>>>>>>>>> OK. There is something weird happening. I've got several such
>>>>>>>>> entries in my swift log:
>>>>>>>>>
>>>>>>>>> 2007-08-06 14:46:58,565 DEBUG vdl:execute2 Application
>>>>>>>>> exception: Task failed
>>>>>>>>> task:execute @ vdl-int.k, line: 332
>>>>>>>>> vdl:execute2 @ execute-default.k, line: 22
>>>>>>>>> vdl:execute @ MolDyn-244-loops.kml, line: 20
>>>>>>>>> antchmbr @ MolDyn-244-loops.kml, line: 2845
>>>>>>>>> vdl:mains @ MolDyn-244-loops.kml, line: 2267
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Looks like antechamber has failed (?). And the failure is only
>>>>>>>>> on a swfit side, it never made it across to Falcon (there are
>>>>>>>>> no remote directories created). But I see some of antechamber
>>>>>>>>> jobs have finished (in shared).
>>>>>>>>>
>>>>>>>>> Yuqing -- could the changes you've made be responsible for
>>>>>>>>> these failures (I do not see how it could though) ?
>>>>>>>>>
>>>>>>>>> Ioan, what do you see in your logs ion these tasks:
>>>>>>>>>
>>>>>>>>> 2007-08-06 14:46:58,555 DEBUG TaskImpl Task(type=1,
>>>>>>>>> identity=urn:0-1-56-0-1186429255786) setting status to Failed
>>>>>>>>> 2007-08-06 14:46:58,556 DEBUG TaskImpl Task(type=1,
>>>>>>>>> identity=urn:0-1-57-0-1186429255798) setting status to Failed
>>>>>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
>>>>>>>>> identity=urn:0-1-59-0-1186429255800) setting status to Failed
>>>>>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
>>>>>>>>> identity=urn:0-1-60-0-1186429255805) setting status to Failed
>>>>>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
>>>>>>>>> identity=urn:0-1-61-0-1186429255811) setting status to Failed
>>>>>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
>>>>>>>>> identity=urn:0-1-58-0-1186429255814) setting status to Failed
>>>>>>>>>
>>>>>>>>> Nika
>>>>>>>>>
>>>>>>>>> On Aug 6, 2007, at 2:29 PM, Ioan Raicu wrote:
>>>>>>>>>
>>>>>>>>>> OK!
>>>>>>>>>> Why don't we do one last run from my allocation, as
>>>>>>>>>> everything is set up already and ready to go! Make sure to
>>>>>>>>>> enable all debug logging. Falkon is up and running with all
>>>>>>>>>> debug enabled!
>>>>>>>>>>
>>>>>>>>>> Falkon location is unchanged from the last experiment.
>>>>>>>>>> Falkon Factory Service:
>>>>>>>>>> http://tg-viz-login2:50010/wsrf/services/GenericPortal/core/WS/GPFactoryService
>>>>>>>>>>
>>>>>>>>>> Web Server (graphs):
>>>>>>>>>> http://tg-viz-login2.uc.teragrid.org:51000/index.htm
>>>>>>>>>>
>>>>>>>>>> ANL/UC is not quite so idle as it was earlier, but I bet we
>>>>>>>>>> could still get 150~200 processors!
>>>>>>>>>>
>>>>>>>>>> Ioan
>>>>>>>>>>
>>>>>>>>>> Veronika Nefedova wrote:
>>>>>>>>>>> m050 and m179 finished just fine now via GRAM (thanks to
>>>>>>>>>>> Yuqing who fixed the m179 just in time!). We could start
>>>>>>>>>>> again the 244- molecule run to verify that nothing is wrong
>>>>>>>>>>> with the whole system.
>>>>>>>>>>>
>>>>>>>>>>> Nika
>>>>>>>>>>>
>>>>>>>>>>> On Aug 6, 2007, at 12:20 PM, Veronika Nefedova wrote:
>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> On Aug 6, 2007, at 11:51 AM, Ioan Raicu wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> I started those 2 molecules via GRAM. I have no trust in
>>>>>>>>>>>> m179 finishing completely since I didn't change anything. I
>>>>>>>>>>>> hope for m050 to finish though...
>>>>>>>>>>>> You can watch the swift log on viper in
>>>>>>>>>>>> ~nefedova/alamines/MolDyn-2-loops-be9484k93kk21.log
>>>>>>>>>>>>
>>>>>>>>>>>> Nika
>>>>>>>>>>>>
>>>>>>>>>>>>> Then, let's try another run with 244 molecules soon, as
>>>>>>>>>>>>> most of ANL/UC is free!
>>>>>>>>>>>>>
>>>>>>>>>>>>> Ioan
>>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>> _______________________________________________
>>>>>> Swift-devel mailing list
>>>>>> Swift-devel at ci.uchicago.edu
>>>>>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
>>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> Swift-devel mailing list
>>>> Swift-devel at ci.uchicago.edu
>>>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
>>>>
>>>
>>>
>>
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