[Swift-devel] Q about MolDyn
Veronika Nefedova
nefedova at mcs.anl.gov
Mon Aug 6 21:36:04 CDT 2007
Whats up now? Everything has stopped, no errors on swift site...
Do you have any errors now?
Nika
On Aug 6, 2007, at 6:04 PM, Ioan Raicu wrote:
> OK, I restarted Falkon as well as there were 12K jobs trying to go
> through, and keeping the entire ANL/UC site busy, although there
> was no Swift on the other end to pick up the notifications...
>
> here is the new info:
>
> Falkon Factory Service: http://tg-viz-login2:50020/wsrf/services/
> GenericPortal/core/WS/GPFactoryService
> Web server: http://tg-viz-login2.uc.teragrid.org:51000/index.htm
>
> Note that I changed the port #, its now 50020, so don't forget to
> change that before you start Swift...
>
> Ioan
>
> Veronika Nefedova wrote:
>> OK. I accidentally closed viper window where I started the
>> workflow. The workflow was started with & so it was supposed to
>> stay up even if I exited the shell. But apparently it didn't!
>>
>> This is the last entry in the log:
>>
>> 2007-08-06 17:16:59,483 INFO ResourcePool Destroying remote
>> service instance... dummy function, this doesn't really do
>> anything...
>>
>> (and it doesn't change ever since).
>>
>> What went wrong ? Why closing the shell actually killed the job?
>> (ps shows no swift job)
>> I checked 'history' and in fact the job was started with &:
>>
>> 999 swift -tc.file tc-uc.data -sites.file sites-uc-64.xml -
>> debug MolDyn-244-loops.swift &
>>
>> I'll restart the workflow in 30 mins or so (from home) again.
>>
>> Sigh...
>>
>> Nika
>>
>>
>> On Aug 6, 2007, at 4:29 PM, Veronika Nefedova wrote:
>>
>>> Ioan, its all was due to NFS problems, I am convinced now...
>>>
>>> I restarted the run, the log is ~nefedova/alamines/MolDyn-244-
>>> loops-hxl1glhtqsag0.log
>>>
>>> Nika
>>>
>>> On Aug 6, 2007, at 4:20 PM, Ioan Raicu wrote:
>>>
>>>> Just to debug further.... I picked out 1 task at random from the
>>>> Swift log...
>>>> iraicu at viper:/home/nefedova/alamines> cat MolDyn-244-loops-
>>>> dbui34oxjr4j2.log | grep "urn:0-1-62-0-1186429258791"
>>>> 2007-08-06 14:47:03,281 DEBUG TaskImpl Task(type=2, identity=urn:
>>>> 0-1-62-0-1186429258791) setting status to Submitted
>>>> 2007-08-06 14:47:03,281 DEBUG TaskImpl Task(type=2, identity=urn:
>>>> 0-1-62-0-1186429258791) setting status to Active
>>>> 2007-08-06 14:47:03,704 DEBUG TaskImpl Task(type=2, identity=urn:
>>>> 0-1-62-0-1186429258791) setting status to Failed Exception in
>>>> getFile
>>>>
>>>> but in my log, it is nowhere to be found...
>>>> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> cat
>>>> GenericPortalWS_taskPerf.txt | grep "urn:0-1-62-0-1186429258791"
>>>>
>>>> What does "setting status to Failed Exception in getFile" mean?
>>>> Could this mean that it failed on the data staging part, and
>>>> that it never made it to Falkon?
>>>>
>>>> BTW, it lloks as if there were really 539 jobs submitted...
>>>>
>>>> iraicu at viper:/home/nefedova/alamines> grep "Submitted"
>>>> MolDyn-244-loops-dbui34oxjr4j2.log | wc
>>>> 539 5390 62835
>>>>
>>>> but again, only 57 made it to Falkon, and there were no
>>>> exceptions thrown anywhere to indicate that something unusual
>>>> happened.
>>>>
>>>> Ioan
>>>>
>>>> Ioan Raicu wrote:
>>>>> Falkon only has 57 tasks received, here they are:
>>>>> tg-viz-login.uc.teragrid.org:/home/iraicu/java/Falkon_v0.8.1/
>>>>> service/logs/GenericPortalWS.txt.0.summary
>>>>>
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh pre_ch-vsk58efi stdout.txt stderr.txt . ./
>>>>> m179.mol2 ./m050.mol2 m179_am1 m050_am1 /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/pre-antch.pl
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-xsk58efi stdout.txt stderr.txt m179_am1
>>>>> m179_am1.rtf m179_am1.crd m179_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m179_am1 -fi mol2 -rn
>>>>> m179 -o m179_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-ysk58efi stdout.txt stderr.txt m050_am1
>>>>> m050_am1.rtf m050_am1.crd m050_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m050_am1 -fi mol2 -rn
>>>>> m050 -o m050_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh chrm-0tk58efi equil_solv.out_m050 stderr.txt
>>>>> equil_solv.inp parm03_gaff_all.rtf parm03_gaffnb_all.prm
>>>>> equil_solv.inp m050_am1.rtf m050_am1.prm m050_am1.crd
>>>>> water_400.crd equil_solv.out_m050 solv_m050.psf
>>>>> solv_m050_eq.crd solv_m050.rst solv_m050.trj
>>>>> solv_m050_min.crd /disks/scratchgpfs1/iraicu/ModLyn/bin/
>>>>> charmm.sh system:solv_m050 title:solv stitle:m050
>>>>> rtffile:parm03_gaff_all.rtf paramfile:parm03_gaffnb_all.prm
>>>>> gaff:m050_am1 nwater:400 ligcrd:lyz rforce:0 iseed:3131887
>>>>> rwater:15 nstep:10000 minstep:100 skipstep:100 startstep:10000
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh chrm-zsk58efi equil_solv.out_m179 stderr.txt
>>>>> equil_solv.inp parm03_gaff_all.rtf parm03_gaffnb_all.prm
>>>>> equil_solv.inp m179_am1.rtf m179_am1.prm m179_am1.crd
>>>>> water_400.crd equil_solv.out_m179 solv_m179.psf
>>>>> solv_m179_eq.crd solv_m179.rst solv_m179.trj
>>>>> solv_m179_min.crd /disks/scratchgpfs1/iraicu/ModLyn/bin/
>>>>> charmm.sh system:solv_m179 title:solv stitle:m179
>>>>> rtffile:parm03_gaff_all.rtf paramfile:parm03_gaffnb_all.prm
>>>>> gaff:m179_am1 nwater:400 ligcrd:lyz rforce:0 iseed:3131887
>>>>> rwater:15 nstep:10000 minstep:100 skipstep:100 startstep:10000
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh pre_ch-38lc8efi stdout.txt stderr.txt . ./
>>>>> m197.mol2 ./m129.mol2 ./m069.mol2 ./m163.mol2 ./m128.mol2 ./
>>>>> m035.mol2 ./m070.mol2 ./m221.mol2 ./m162.mol2 ./m198.mol2 ./
>>>>> m034.mol2 ./m001.mol2 ./m220.mol2 ./m033.mol2 ./m161.mol2 ./
>>>>> m032.mol2 ./m160.mol2 ./m130.mol2 ./m071.mol2 ./m002.mol2 ./
>>>>> m199.mol2 ./m175.mol2 ./m234.mol2 ./m048.mol2 ./m107.mol2 ./
>>>>> m047.mol2 ./m106.mol2 ./m124.mol2 ./m193.mol2 ./m225.mol2 ./
>>>>> m066.mol2 ./m125.mol2 ./m176.mol2 ./m194.mol2 ./m224.mol2 ./
>>>>> m235.mol2 ./m067.mol2 ./m165.mol2 ./m049.mol2 ./m126.mol2 ./
>>>>> m166.mol2 ./m108.mol2 ./m195.mol2 ./m038.mol2 ./m059.mol2 ./
>>>>> m036.mol2 ./m186.mol2 ./m164.mol2 ./m117.mol2 ./m223.mol2 ./
>>>>> m058.mol2 ./m037.mol2 ./m188.mol2 ./m068.mol2 ./m119.mol2 ./
>>>>> m187.mol2 ./m196.mol2 ./m118.mol2 ./m127.mol2 ./m222.mol2 ./
>>>>> m189.mol2 ./m060.mol2 ./m236.mol2 ./m109.mol2 ./m177.mol2 ./
>>>>> m050.mol2 ./m179.mol2 ./m178.mol2 ./m123.mol2 ./m237.mol2 ./
>>>>> m110.mol2 ./m191.mol2 ./m100.mol2 ./m064.mol2 ./m041.mol2 ./
>>>>> m238.mol2 ./m063.mol2 ./m228.mol2 ./m051.mol2 ./m122.mol2 ./
>>>>> m169.mol2 ./m121.mol2 ./m190.mol2 ./m120.mol2 ./m062.mol2 ./
>>>>> m065.mol2 ./m039.mol2 ./m192.mol2 ./m167.mol2 ./m227.mol2 ./
>>>>> m040.mol2 ./m226.mol2 ./m168.mol2 ./m239.mol2 ./m052.mol2 ./
>>>>> m111.mol2 ./m180.mol2 ./m053.mol2 ./m112.mol2 ./m181.mol2 ./
>>>>> m240.mol2 ./m054.mol2 ./m044.mol2 ./m113.mol2 ./m230.mol2 ./
>>>>> m103.mol2 ./m229.mol2 ./m061.mol2 ./m042.mol2 ./m101.mol2 ./
>>>>> m170.mol2 ./m043.mol2 ./m102.mol2 ./m171.mol2 ./m151.mol2 ./
>>>>> m083.mol2 ./m210.mol2 ./m014.mol2 ./m023.mol2 ./m200.mol2 ./
>>>>> m092.mol2 ./m091.mol2 ./m150.mol2 ./m209.mol2 ./m022.mol2 ./
>>>>> m024.mol2 ./m093.mol2 ./m015.mol2 ./m084.mol2 ./m142.mol2 ./
>>>>> m201.mol2 ./m016.mol2 ./m085.mol2 ./m143.mol2 ./m202.mol2 ./
>>>>> m010.mol2 ./m212.mol2 ./m138.mol2 ./m026.mol2 ./m011.mol2 ./
>>>>> m095.mol2 ./m139.mol2 ./m154.mol2 ./m211.mol2 ./m025.mol2 ./
>>>>> m094.mol2 ./m153.mol2 ./m213.mol2 ./m080.mol2 ./m012.mol2 ./
>>>>> m152.mol2 ./m081.mol2 ./m140.mol2 ./m013.mol2 ./m082.mol2 ./
>>>>> m141.mol2 ./m028.mol2 ./m097.mol2 ./m155.mol2 ./m008.mol2 ./
>>>>> m214.mol2 ./m135.mol2 ./m029.mol2 ./m076.mol2 ./m098.mol2 ./
>>>>> m007.mol2 ./m156.mol2 ./m134.mol2 ./m215.mol2 ./m137.mol2 ./
>>>>> m079.mol2 ./m009.mol2 ./m078.mol2 ./m077.mol2 ./m096.mol2 ./
>>>>> m136.mol2 ./m027.mol2 ./m132.mol2 ./m158.mol2 ./m073.mol2 ./
>>>>> m217.mol2 ./m030.mol2 ./m159.mol2 ./m072.mol2 ./m218.mol2 ./
>>>>> m003.mol2 ./m031.mol2 ./m004.mol2 ./m219.mol2 ./m131.mol2 ./
>>>>> m074.mol2 ./m133.mol2 ./m006.mol2 ./m075.mol2 ./m157.mol2 ./
>>>>> m099.mol2 ./m005.mol2 ./m216.mol2 ./m090.mol2 ./m021.mol2 ./
>>>>> m208.mol2 ./m149.mol2 ./m020.mol2 ./m207.mol2 ./m148.mol2 ./
>>>>> m088.mol2 ./m089.mol2 ./m206.mol2 ./m147.mol2 ./m019.mol2 ./
>>>>> m205.mol2 ./m146.mol2 ./m087.mol2 ./m018.mol2 ./m204.mol2 ./
>>>>> m145.mol2 ./m086.mol2 ./m017.mol2 ./m144.mol2 ./m203.mol2 ./
>>>>> m057.mol2 ./m116.mol2 ./m232.mol2 ./m173.mol2 ./m105.mol2 ./
>>>>> m046.mol2 ./m231.mol2 ./m172.mol2 ./m104.mol2 ./m045.mol2 ./
>>>>> m174.mol2 ./m233.mol2 ./m244.mol2 ./m185.mol2 ./m182.mol2 ./
>>>>> m243.mol2 ./m055.mol2 ./m241.mol2 ./m183.mol2 ./m114.mol2 ./
>>>>> m056.mol2 ./m242.mol2 ./m184.mol2 ./m115.mol2 m197_am1 m129_am1
>>>>> m069_am1 m163_am1 m128_am1 m035_am1 m070_am1 m221_am1 m162_am1
>>>>> m198_am1 m034_am1 m001_am1 m220_am1 m033_am1 m161_am1 m032_am1
>>>>> m160_am1 m130_am1 m071_am1 m002_am1 m199_am1 m175_am1 m234_am1
>>>>> m048_am1 m107_am1 m047_am1 m106_am1 m124_am1 m193_am1 m225_am1
>>>>> m066_am1 m125_am1 m176_am1 m194_am1 m224_am1 m235_am1 m067_am1
>>>>> m165_am1 m049_am1 m126_am1 m166_am1 m108_am1 m195_am1 m038_am1
>>>>> m059_am1 m036_am1 m186_am1 m164_am1 m223_am1 m117_am1 m037_am1
>>>>> m058_am1 m068_am1 m188_am1 m119_am1 m196_am1 m187_am1 m222_am1
>>>>> m127_am1 m118_am1 m189_am1 m060_am1 m236_am1 m109_am1 m177_am1
>>>>> m050_am1 m179_am1 m123_am1 m178_am1 m237_am1 m100_am1 m191_am1
>>>>> m110_am1 m041_am1 m064_am1 m228_am1 m063_am1 m238_am1 m169_am1
>>>>> m122_am1 m051_am1 m121_am1 m190_am1 m120_am1 m062_am1 m039_am1
>>>>> m065_am1 m167_am1 m192_am1 m227_am1 m040_am1 m226_am1 m168_am1
>>>>> m239_am1 m052_am1 m111_am1 m180_am1 m053_am1 m112_am1 m181_am1
>>>>> m240_am1 m054_am1 m044_am1 m113_am1 m230_am1 m103_am1 m229_am1
>>>>> m061_am1 m042_am1 m101_am1 m170_am1 m043_am1 m102_am1 m171_am1
>>>>> m151_am1 m083_am1 m210_am1 m014_am1 m023_am1 m200_am1 m092_am1
>>>>> m091_am1 m150_am1 m209_am1 m022_am1 m024_am1 m093_am1 m015_am1
>>>>> m084_am1 m142_am1 m201_am1 m016_am1 m085_am1 m143_am1 m202_am1
>>>>> m010_am1 m212_am1 m138_am1 m026_am1 m011_am1 m095_am1 m139_am1
>>>>> m154_am1 m211_am1 m025_am1 m094_am1 m153_am1 m213_am1 m080_am1
>>>>> m012_am1 m152_am1 m081_am1 m140_am1 m013_am1 m082_am1 m141_am1
>>>>> m028_am1 m097_am1 m155_am1 m008_am1 m214_am1 m135_am1 m029_am1
>>>>> m076_am1 m098_am1 m007_am1 m156_am1 m134_am1 m215_am1 m137_am1
>>>>> m079_am1 m009_am1 m078_am1 m077_am1 m096_am1 m136_am1 m027_am1
>>>>> m132_am1 m158_am1 m073_am1 m217_am1 m030_am1 m159_am1 m072_am1
>>>>> m218_am1 m003_am1 m031_am1 m004_am1 m219_am1 m131_am1 m074_am1
>>>>> m133_am1 m006_am1 m075_am1 m157_am1 m099_am1 m216_am1 m005_am1
>>>>> m090_am1 m021_am1 m208_am1 m149_am1 m020_am1 m207_am1 m148_am1
>>>>> m089_am1 m088_am1 m206_am1 m147_am1 m019_am1 m205_am1 m146_am1
>>>>> m087_am1 m018_am1 m204_am1 m145_am1 m086_am1 m017_am1 m144_am1
>>>>> m203_am1 m057_am1 m116_am1 m232_am1 m173_am1 m105_am1 m046_am1
>>>>> m231_am1 m172_am1 m104_am1 m045_am1 m174_am1 m233_am1 m244_am1
>>>>> m185_am1 m182_am1 m243_am1 m055_am1 m241_am1 m183_am1 m114_am1
>>>>> m056_am1 m242_am1 m184_am1 m115_am1 /disks/scratchgpfs1/iraicu/
>>>>> ModLyn/bin/pre-antch.pl
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-58lc8efi stdout.txt stderr.txt m197_am1
>>>>> m197_am1.rtf m197_am1.crd m197_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m197_am1 -fi mol2 -rn
>>>>> m197 -o m197_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-48lc8efi stdout.txt stderr.txt m129_am1
>>>>> m129_am1.rtf m129_am1.crd m129_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m129_am1 -fi mol2 -rn
>>>>> m129 -o m129_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-68lc8efi stdout.txt stderr.txt m069_am1
>>>>> m069_am1.rtf m069_am1.crd m069_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m069_am1 -fi mol2 -rn
>>>>> m069 -o m069_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-88lc8efi stdout.txt stderr.txt m163_am1
>>>>> m163_am1.rtf m163_am1.crd m163_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m163_am1 -fi mol2 -rn
>>>>> m163 -o m163_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-78lc8efi stdout.txt stderr.txt m128_am1
>>>>> m128_am1.rtf m128_am1.crd m128_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m128_am1 -fi mol2 -rn
>>>>> m128 -o m128_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-98lc8efi stdout.txt stderr.txt m035_am1
>>>>> m035_am1.rtf m035_am1.crd m035_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m035_am1 -fi mol2 -rn
>>>>> m035 -o m035_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-a8lc8efi stdout.txt stderr.txt m070_am1
>>>>> m070_am1.rtf m070_am1.crd m070_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m070_am1 -fi mol2 -rn
>>>>> m070 -o m070_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-b8lc8efi stdout.txt stderr.txt m221_am1
>>>>> m221_am1.rtf m221_am1.crd m221_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m221_am1 -fi mol2 -rn
>>>>> m221 -o m221_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-c8lc8efi stdout.txt stderr.txt m162_am1
>>>>> m162_am1.rtf m162_am1.crd m162_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m162_am1 -fi mol2 -rn
>>>>> m162 -o m162_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-d8lc8efi stdout.txt stderr.txt m198_am1
>>>>> m198_am1.rtf m198_am1.crd m198_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m198_am1 -fi mol2 -rn
>>>>> m198 -o m198_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-e8lc8efi stdout.txt stderr.txt m034_am1
>>>>> m034_am1.rtf m034_am1.crd m034_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m034_am1 -fi mol2 -rn
>>>>> m034 -o m034_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-f8lc8efi stdout.txt stderr.txt m001_am1
>>>>> m001_am1.rtf m001_am1.crd m001_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m001_am1 -fi mol2 -rn
>>>>> m001 -o m001_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-h8lc8efi stdout.txt stderr.txt m033_am1
>>>>> m033_am1.rtf m033_am1.crd m033_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m033_am1 -fi mol2 -rn
>>>>> m033 -o m033_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-g8lc8efi stdout.txt stderr.txt m220_am1
>>>>> m220_am1.rtf m220_am1.crd m220_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m220_am1 -fi mol2 -rn
>>>>> m220 -o m220_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-i8lc8efi stdout.txt stderr.txt m161_am1
>>>>> m161_am1.rtf m161_am1.crd m161_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m161_am1 -fi mol2 -rn
>>>>> m161 -o m161_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-j8lc8efi stdout.txt stderr.txt m032_am1
>>>>> m032_am1.rtf m032_am1.crd m032_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m032_am1 -fi mol2 -rn
>>>>> m032 -o m032_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-k8lc8efi stdout.txt stderr.txt m160_am1
>>>>> m160_am1.rtf m160_am1.crd m160_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m160_am1 -fi mol2 -rn
>>>>> m160 -o m160_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-l8lc8efi stdout.txt stderr.txt m130_am1
>>>>> m130_am1.rtf m130_am1.crd m130_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m130_am1 -fi mol2 -rn
>>>>> m130 -o m130_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-m8lc8efi stdout.txt stderr.txt m071_am1
>>>>> m071_am1.rtf m071_am1.crd m071_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m071_am1 -fi mol2 -rn
>>>>> m071 -o m071_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-o8lc8efi stdout.txt stderr.txt m199_am1
>>>>> m199_am1.rtf m199_am1.crd m199_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m199_am1 -fi mol2 -rn
>>>>> m199 -o m199_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-n8lc8efi stdout.txt stderr.txt m002_am1
>>>>> m002_am1.rtf m002_am1.crd m002_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m002_am1 -fi mol2 -rn
>>>>> m002 -o m002_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-p8lc8efi stdout.txt stderr.txt m175_am1
>>>>> m175_am1.rtf m175_am1.crd m175_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m175_am1 -fi mol2 -rn
>>>>> m175 -o m175_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-q8lc8efi stdout.txt stderr.txt m234_am1
>>>>> m234_am1.rtf m234_am1.crd m234_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m234_am1 -fi mol2 -rn
>>>>> m234 -o m234_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-s8lc8efi stdout.txt stderr.txt m107_am1
>>>>> m107_am1.rtf m107_am1.crd m107_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m107_am1 -fi mol2 -rn
>>>>> m107 -o m107_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-r8lc8efi stdout.txt stderr.txt m048_am1
>>>>> m048_am1.rtf m048_am1.crd m048_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m048_am1 -fi mol2 -rn
>>>>> m048 -o m048_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-v8lc8efi stdout.txt stderr.txt m124_am1
>>>>> m124_am1.rtf m124_am1.crd m124_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m124_am1 -fi mol2 -rn
>>>>> m124 -o m124_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-t8lc8efi stdout.txt stderr.txt m047_am1
>>>>> m047_am1.rtf m047_am1.crd m047_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m047_am1 -fi mol2 -rn
>>>>> m047 -o m047_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-u8lc8efi stdout.txt stderr.txt m106_am1
>>>>> m106_am1.rtf m106_am1.crd m106_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m106_am1 -fi mol2 -rn
>>>>> m106 -o m106_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-x8lc8efi stdout.txt stderr.txt m193_am1
>>>>> m193_am1.rtf m193_am1.crd m193_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m193_am1 -fi mol2 -rn
>>>>> m193 -o m193_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-y8lc8efi stdout.txt stderr.txt m225_am1
>>>>> m225_am1.rtf m225_am1.crd m225_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m225_am1 -fi mol2 -rn
>>>>> m225 -o m225_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-z8lc8efi stdout.txt stderr.txt m066_am1
>>>>> m066_am1.rtf m066_am1.crd m066_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m066_am1 -fi mol2 -rn
>>>>> m066 -o m066_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-09lc8efi stdout.txt stderr.txt m125_am1
>>>>> m125_am1.rtf m125_am1.crd m125_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m125_am1 -fi mol2 -rn
>>>>> m125 -o m125_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-29lc8efi stdout.txt stderr.txt m194_am1
>>>>> m194_am1.rtf m194_am1.crd m194_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m194_am1 -fi mol2 -rn
>>>>> m194 -o m194_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-19lc8efi stdout.txt stderr.txt m176_am1
>>>>> m176_am1.rtf m176_am1.crd m176_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m176_am1 -fi mol2 -rn
>>>>> m176 -o m176_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-39lc8efi stdout.txt stderr.txt m224_am1
>>>>> m224_am1.rtf m224_am1.crd m224_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m224_am1 -fi mol2 -rn
>>>>> m224 -o m224_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-49lc8efi stdout.txt stderr.txt m235_am1
>>>>> m235_am1.rtf m235_am1.crd m235_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m235_am1 -fi mol2 -rn
>>>>> m235 -o m235_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-69lc8efi stdout.txt stderr.txt m165_am1
>>>>> m165_am1.rtf m165_am1.crd m165_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m165_am1 -fi mol2 -rn
>>>>> m165 -o m165_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-59lc8efi stdout.txt stderr.txt m067_am1
>>>>> m067_am1.rtf m067_am1.crd m067_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m067_am1 -fi mol2 -rn
>>>>> m067 -o m067_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-79lc8efi stdout.txt stderr.txt m049_am1
>>>>> m049_am1.rtf m049_am1.crd m049_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m049_am1 -fi mol2 -rn
>>>>> m049 -o m049_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-89lc8efi stdout.txt stderr.txt m126_am1
>>>>> m126_am1.rtf m126_am1.crd m126_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m126_am1 -fi mol2 -rn
>>>>> m126 -o m126_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-99lc8efi stdout.txt stderr.txt m166_am1
>>>>> m166_am1.rtf m166_am1.crd m166_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m166_am1 -fi mol2 -rn
>>>>> m166 -o m166_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-a9lc8efi stdout.txt stderr.txt m108_am1
>>>>> m108_am1.rtf m108_am1.crd m108_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m108_am1 -fi mol2 -rn
>>>>> m108 -o m108_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-b9lc8efi stdout.txt stderr.txt m195_am1
>>>>> m195_am1.rtf m195_am1.crd m195_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m195_am1 -fi mol2 -rn
>>>>> m195 -o m195_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-d9lc8efi stdout.txt stderr.txt m038_am1
>>>>> m038_am1.rtf m038_am1.crd m038_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m038_am1 -fi mol2 -rn
>>>>> m038 -o m038_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-c9lc8efi stdout.txt stderr.txt m059_am1
>>>>> m059_am1.rtf m059_am1.crd m059_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m059_am1 -fi mol2 -rn
>>>>> m059 -o m059_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-e9lc8efi stdout.txt stderr.txt m186_am1
>>>>> m186_am1.rtf m186_am1.crd m186_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m186_am1 -fi mol2 -rn
>>>>> m186 -o m186_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-f9lc8efi stdout.txt stderr.txt m164_am1
>>>>> m164_am1.rtf m164_am1.crd m164_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m164_am1 -fi mol2 -rn
>>>>> m164 -o m164_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-h9lc8efi stdout.txt stderr.txt m036_am1
>>>>> m036_am1.rtf m036_am1.crd m036_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m036_am1 -fi mol2 -rn
>>>>> m036 -o m036_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-g9lc8efi stdout.txt stderr.txt m223_am1
>>>>> m223_am1.rtf m223_am1.crd m223_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m223_am1 -fi mol2 -rn
>>>>> m223 -o m223_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-j9lc8efi stdout.txt stderr.txt m058_am1
>>>>> m058_am1.rtf m058_am1.crd m058_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m058_am1 -fi mol2 -rn
>>>>> m058 -o m058_am1 -fo charmm -c bcc
>>>>> 128.135.160.234 : EXECUTABLE /bin/sh ARGUEMENTS shared/
>>>>> wrapper.sh antch-k9lc8efi stdout.txt stderr.txt m037_am1
>>>>> m037_am1.rtf m037_am1.crd m037_am1.prm /disks/scratchgpfs1/
>>>>> iraicu/ModLyn/bin/antechamber.sh -s 2 -i m037_am1 -fi mol2 -rn
>>>>> m037 -o m037_am1 -fo charmm -c bcc
>>>>>
>>>>>
>>>>>
>>>>> Veronika Nefedova wrote:
>>>>>> Swift thinks that it sent 248 jobs.
>>>>>>
>>>>>> nefedova at viper:~/alamines> grep "Running job " MolDyn-244-
>>>>>> loops-dbui34oxjr4j2.log | wc
>>>>>> 248 6931 56718
>>>>>> nefedova at viper:~/alamines>
>>>>>>
>>>>>> On Aug 6, 2007, at 3:27 PM, Ioan Raicu wrote:
>>>>>>
>>>>>>> Everything is idle, there is no work to be done...
>>>>>>>
>>>>>>> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> tail
>>>>>>> GenericPortalWS_perf_per_sec.txt
>>>>>>> 3510.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3511.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3512.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3513.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3514.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3515.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3516.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3517.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3518.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>> 3519.997 0 2 41 24 24 0 0 0.0 0.0 0.0 0.0 57.0 0.0
>>>>>>>
>>>>>>> 24 workers are registered but idle.... queue length 0, 57
>>>>>>> jobs completed.
>>>>>>>
>>>>>>> Also, see below all 57 jobs, they all finished with an exit
>>>>>>> code of 0, in other words succesfully! How many jobs does
>>>>>>> Swift think it sent?
>>>>>>>
>>>>>>> Ioan
>>>>>>>
>>>>>>> iraicu at tg-viz-login2:~/java/Falkon_v0.8.1/service/logs> cat
>>>>>>> GenericPortalWS_taskPerf.txt
>>>>>>> //taskNum taskID workerID startTimeStamp execTimeStamp
>>>>>>> resultsQueueTimeStamp endTimeStamp waitQueueTime ex
>>>>>>> ecTime resultsQueueTime totalTime exitCode
>>>>>>> 1 urn:0-0-1186428880921 192.5.198.70:50100 510496 560276
>>>>>>> 560614 560629 49780 338 15 50133 0
>>>>>>> 2 urn:0-1-1-0-1186428880939 192.5.198.70:50101 560984 561200
>>>>>>> 561899 561909 216 699 10 925 0
>>>>>>> 3 urn:0-1-2-0-1186428880941 192.5.198.70:50100 560991 561373
>>>>>>> 562150 562159 382 777 9 1168 0
>>>>>>> 4 urn:0-0-1186429254652 192.5.198.71:50100 972312 1034716
>>>>>>> 1044916 1044926 62404 10200 10 72614 0
>>>>>>> 5 urn:0-1-2-0-1186429255467 192.5.198.71:50101 1046318
>>>>>>> 1046453 1047038 1047067 135 585 29 749 0
>>>>>>> 6 urn:0-1-1-0-1186429255461 192.5.198.71:50100 1046315
>>>>>>> 1046429 1053072 1053080 114 6643 8 6765 0
>>>>>>> 7 urn:0-1-3-0-1186429255469 192.5.198.71:50101 1046320
>>>>>>> 1047051 1054256 1054290 731 7205 34 7970 0
>>>>>>> 8 urn:0-1-5-0-1186429255481 192.5.198.71:50101 1046324
>>>>>>> 1054267 1054570 1054579 7943 303 9 8255 0
>>>>>>> 9 urn:0-1-4-0-1186429255479 192.5.198.71:50100 1046322
>>>>>>> 1053087 1056811 1056819 6765 3724 8 10497 0
>>>>>>> 10 urn:0-1-6-0-1186429255484 192.5.198.71:50101 1046326
>>>>>>> 1054583 1058691 1058719 8257 4108 28 12393 0
>>>>>>> 11 urn:0-1-8-0-1186429255495 192.5.198.71:50101 1046331
>>>>>>> 1058704 1059363 1059385 12373 659 22 13054 0
>>>>>>> 12 urn:0-1-7-0-1186429255486 192.5.198.71:50100 1046329
>>>>>>> 1056826 1060315 1060323 10497 3489 8 13994 0
>>>>>>> 13 urn:0-1-9-0-1186429255502 192.5.198.71:50101 1046333
>>>>>>> 1059375 1060589 1060596 13042 1214 7 14263 0
>>>>>>> 14 urn:0-1-11-0-1186429255514 192.5.198.71:50101 1046338
>>>>>>> 1060603 1060954 1061054 14265 351 100 14716 0
>>>>>>> 15 urn:0-1-10-0-1186429255511 192.5.198.71:50100 1046336
>>>>>>> 1060329 1061094 1061126 13993 765 32 14790 0
>>>>>>> 16 urn:0-1-14-0-1186429255533 192.5.198.71:50100 1046691
>>>>>>> 1061105 1065608 1065617 14414 4503 9 18926 0
>>>>>>> 17 urn:0-1-13-0-1186429255535 192.5.198.71:50100 1046693
>>>>>>> 1065622 1066307 1066315 18929 685 8 19622 0
>>>>>>> 18 urn:0-1-12-0-1186429255524 192.5.198.71:50101 1046689
>>>>>>> 1061045 1067540 1067563 14356 6495 23 20874 0
>>>>>>> 19 urn:0-1-15-0-1186429255539 192.5.198.71:50100 1046695
>>>>>>> 1066320 1069262 1069271 19625 2942 9 22576 0
>>>>>>> 20 urn:0-1-16-0-1186429255543 192.5.198.71:50101 1046697
>>>>>>> 1067551 1071003 1071011 20854 3452 8 24314 0
>>>>>>> 21 urn:0-1-18-0-1186429255559 192.5.198.71:50101 1046700
>>>>>>> 1071016 1071664 1071671 24316 648 7 24971 0
>>>>>>> 22 urn:0-1-17-0-1186429255557 192.5.198.71:50100 1046698
>>>>>>> 1069275 1071679 1071692 22577 2404 13 24994 0
>>>>>>> 23 urn:0-1-19-0-1186429255565 192.5.198.71:50101 1046702
>>>>>>> 1071687 1073978 1073988 24985 2291 10 27286 0
>>>>>>> 24 urn:0-1-20-0-1186429255572 192.5.198.71:50101 1046706
>>>>>>> 1073992 1075959 1075969 27286 1967 10 29263 0
>>>>>>> 25 urn:0-1-21-0-1186429255567 192.5.198.71:50100 1046704
>>>>>>> 1071699 1076704 1076713 24995 5005 9 30009 0
>>>>>>> 26 urn:0-1-22-0-1186429255587 192.5.198.71:50101 1046708
>>>>>>> 1075972 1077451 1077459 29264 1479 8 30751 0
>>>>>>> 27 urn:0-1-23-0-1186429255595 192.5.198.71:50100 1046710
>>>>>>> 1076717 1080157 1080165 30007 3440 8 33455 0
>>>>>>> 28 urn:0-1-25-0-1186429255599 192.5.198.71:50101 1046712
>>>>>>> 1077464 1080270 1080286 30752 2806 16 33574 0
>>>>>>> 29 urn:0-1-24-0-1186429255601 192.5.198.71:50100 1046713
>>>>>>> 1080170 1080611 1080619 33457 441 8 33906 0
>>>>>>> 30 urn:0-1-26-0-1186429255613 192.5.198.71:50100 1046717
>>>>>>> 1080624 1080973 1080983 33907 349 10 34266 0
>>>>>>> 31 urn:0-1-28-0-1186429255611 192.5.198.71:50101 1046715
>>>>>>> 1080281 1081405 1081413 33566 1124 8 34698 0
>>>>>>> 32 urn:0-1-27-0-1186429255616 192.5.198.71:50100 1046719
>>>>>>> 1080986 1082989 1082996 34267 2003 7 36277 0
>>>>>>> 33 urn:0-1-30-0-1186429255635 192.5.198.71:50100 1046723
>>>>>>> 1083002 1083370 1083378 36279 368 8 36655 0
>>>>>>> 34 urn:0-1-29-0-1186429255622 192.5.198.71:50101 1046721
>>>>>>> 1081417 1084830 1084837 34696 3413 7 38116 0
>>>>>>> 35 urn:0-1-32-0-1186429255652 192.5.198.71:50101 1047082
>>>>>>> 1084843 1085854 1085879 37761 1011 25 38797 0
>>>>>>> 36 urn:0-1-34-0-1186429255654 192.5.198.71:50101 1047085
>>>>>>> 1085865 1089502 1089511 38780 3637 9 42426 0
>>>>>>> 37 urn:0-1-33-0-1186429255656 192.5.198.71:50101 1047087
>>>>>>> 1089515 1089966 1089974 42428 451 8 42887 0
>>>>>>> 38 urn:0-1-31-0-1186429255642 192.5.198.71:50100 1046725
>>>>>>> 1083383 1091316 1091324 36658 7933 8 44599 0
>>>>>>> 39 urn:0-1-36-0-1186429255664 192.5.198.71:50100 1047092
>>>>>>> 1091329 1092042 1092049 44237 713 7 44957 0
>>>>>>> 40 urn:0-1-38-0-1186429255673 192.5.198.71:50100 1047095
>>>>>>> 1092055 1094242 1094249 44960 2187 7 47154 0
>>>>>>> 41 urn:0-1-35-0-1186429255658 192.5.198.71:50101 1047090
>>>>>>> 1089979 1094418 1094428 42889 4439 10 47338 0
>>>>>>> 42 urn:0-1-40-0-1186429255696 192.5.198.71:50101 1047102
>>>>>>> 1094433 1095082 1095089 47331 649 7 47987 0
>>>>>>> 43 urn:0-1-41-0-1186429255692 192.5.198.71:50101 1047104
>>>>>>> 1095095 1096846 1096853 47991 1751 7 49749 0
>>>>>>> 44 urn:0-1-39-0-1186429255686 192.5.198.71:50100 1047100
>>>>>>> 1094256 1098214 1098221 47156 3958 7 51121 0
>>>>>>> 45 urn:0-1-42-0-1186429255700 192.5.198.71:50101 1047107
>>>>>>> 1096859 1098627 1098637 49752 1768 10 51530 0
>>>>>>> 46 urn:0-1-37-0-1186429255681 192.5.198.67:50100 1047097
>>>>>>> 1094037 1098903 1098910 46940 4866 7 51813 0
>>>>>>> 47 urn:0-1-50-0-1186429255749 192.5.198.67:50101 1047121
>>>>>>> 1099192 1100210 1100246 52071 1018 36 53125 0
>>>>>>> 48 urn:0-1-44-0-1186429255720 192.5.198.57:50101 1047111
>>>>>>> 1097371 1100555 1100562 50260 3184 7 53451 0
>>>>>>> 49 urn:0-1-43-0-1186429255705 192.5.198.66:50100 1047109
>>>>>>> 1097135 1100896 1100904 50026 3761 8 53795 0
>>>>>>> 50 urn:0-1-48-0-1186429255737 192.5.198.71:50101 1047117
>>>>>>> 1098640 1101106 1101127 51523 2466 21 54010 0
>>>>>>> 51 urn:0-1-51-0-1186429255755 192.5.198.55:50100 1047123
>>>>>>> 1099965 1101217 1101224 52842 1252 7 54101 0
>>>>>>> 52 urn:0-1-47-0-1186429255731 192.5.198.71:50100 1047115
>>>>>>> 1098227 1101820 1101828 51112 3593 8 54713 0
>>>>>>> 53 urn:0-1-45-0-1186429255723 192.5.198.57:50100 1047113
>>>>>>> 1097375 1104132 1104139 50262 6757 7 57026 0
>>>>>>> 54 urn:0-1-52-0-1186429255764 192.5.198.67:50101 1047125
>>>>>>> 1100221 1106449 1106458 53096 6228 9 59333 0
>>>>>>> 55 urn:0-1-46-0-1186429255743 192.5.198.67:50100 1047119
>>>>>>> 1098916 1106473 1106481 51797 7557 8 59362 0
>>>>>>> 56 urn:0-1-2-1-1186428881026 192.5.198.70:50101 563313 563384
>>>>>>> 1207793 1207801 71 644409 8 644488 0
>>>>>>> 57 urn:0-1-1-1-1186428881028 192.5.198.70:50100 563315 563413
>>>>>>> 1216404 1216425 98 652991 21 653110 0
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Veronika Nefedova wrote:
>>>>>>>> OK. There is something weird happening. I've got several
>>>>>>>> such entries in my swift log:
>>>>>>>>
>>>>>>>> 2007-08-06 14:46:58,565 DEBUG vdl:execute2 Application
>>>>>>>> exception: Task failed
>>>>>>>> task:execute @ vdl-int.k, line: 332
>>>>>>>> vdl:execute2 @ execute-default.k, line: 22
>>>>>>>> vdl:execute @ MolDyn-244-loops.kml, line: 20
>>>>>>>> antchmbr @ MolDyn-244-loops.kml, line: 2845
>>>>>>>> vdl:mains @ MolDyn-244-loops.kml, line: 2267
>>>>>>>>
>>>>>>>>
>>>>>>>> Looks like antechamber has failed (?). And the failure is
>>>>>>>> only on a swfit side, it never made it across to Falcon
>>>>>>>> (there are no remote directories created). But I see some of
>>>>>>>> antechamber jobs have finished (in shared).
>>>>>>>>
>>>>>>>> Yuqing -- could the changes you've made be responsible for
>>>>>>>> these failures (I do not see how it could though) ?
>>>>>>>>
>>>>>>>> Ioan, what do you see in your logs ion these tasks:
>>>>>>>>
>>>>>>>> 2007-08-06 14:46:58,555 DEBUG TaskImpl Task(type=1,
>>>>>>>> identity=urn:0-1-56-0-1186429255786) setting status to Failed
>>>>>>>> 2007-08-06 14:46:58,556 DEBUG TaskImpl Task(type=1,
>>>>>>>> identity=urn:0-1-57-0-1186429255798) setting status to Failed
>>>>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
>>>>>>>> identity=urn:0-1-59-0-1186429255800) setting status to Failed
>>>>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
>>>>>>>> identity=urn:0-1-60-0-1186429255805) setting status to Failed
>>>>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
>>>>>>>> identity=urn:0-1-61-0-1186429255811) setting status to Failed
>>>>>>>> 2007-08-06 14:46:58,558 DEBUG TaskImpl Task(type=1,
>>>>>>>> identity=urn:0-1-58-0-1186429255814) setting status to Failed
>>>>>>>>
>>>>>>>> Nika
>>>>>>>>
>>>>>>>> On Aug 6, 2007, at 2:29 PM, Ioan Raicu wrote:
>>>>>>>>
>>>>>>>>> OK!
>>>>>>>>> Why don't we do one last run from my allocation, as
>>>>>>>>> everything is set up already and ready to go! Make sure to
>>>>>>>>> enable all debug logging. Falkon is up and running with
>>>>>>>>> all debug enabled!
>>>>>>>>>
>>>>>>>>> Falkon location is unchanged from the last experiment.
>>>>>>>>> Falkon Factory Service: http://tg-viz-login2:50010/wsrf/
>>>>>>>>> services/GenericPortal/core/WS/GPFactoryService
>>>>>>>>> Web Server (graphs): http://tg-viz-login2.uc.teragrid.org:
>>>>>>>>> 51000/index.htm
>>>>>>>>>
>>>>>>>>> ANL/UC is not quite so idle as it was earlier, but I bet we
>>>>>>>>> could still get 150~200 processors!
>>>>>>>>>
>>>>>>>>> Ioan
>>>>>>>>>
>>>>>>>>> Veronika Nefedova wrote:
>>>>>>>>>> m050 and m179 finished just fine now via GRAM (thanks to
>>>>>>>>>> Yuqing who fixed the m179 just in time!). We could start
>>>>>>>>>> again the 244- molecule run to verify that nothing is
>>>>>>>>>> wrong with the whole system.
>>>>>>>>>>
>>>>>>>>>> Nika
>>>>>>>>>>
>>>>>>>>>> On Aug 6, 2007, at 12:20 PM, Veronika Nefedova wrote:
>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> On Aug 6, 2007, at 11:51 AM, Ioan Raicu wrote:
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> I started those 2 molecules via GRAM. I have no trust in
>>>>>>>>>>> m179 finishing completely since I didn't change anything.
>>>>>>>>>>> I hope for m050 to finish though...
>>>>>>>>>>> You can watch the swift log on viper in ~nefedova/
>>>>>>>>>>> alamines/MolDyn-2-loops-be9484k93kk21.log
>>>>>>>>>>>
>>>>>>>>>>> Nika
>>>>>>>>>>>
>>>>>>>>>>>> Then, let's try another run with 244 molecules soon, as
>>>>>>>>>>>> most of ANL/UC is free!
>>>>>>>>>>>>
>>>>>>>>>>>> Ioan
>>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>> _______________________________________________
>>>>> Swift-devel mailing list
>>>>> Swift-devel at ci.uchicago.edu
>>>>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
>>>>>
>>>>
>>>
>>> _______________________________________________
>>> Swift-devel mailing list
>>> Swift-devel at ci.uchicago.edu
>>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
>>>
>>
>>
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