[Swift-commit] r8365 - SwiftApps/dsp-swift

[ketan at ci.uchicago.edu]

Author: ketan
Date: 2015-01-20 09:13:56 -0600 (Tue, 20 Jan 2015)
New Revision: 8365

Modified:
   SwiftApps/dsp-swift/README
   SwiftApps/dsp-swift/apps
Log:
README and a small change in app

Modified: SwiftApps/dsp-swift/README
===================================================================
--- SwiftApps/dsp-swift/README	2015-01-20 14:59:02 UTC (rev 8364)
+++ SwiftApps/dsp-swift/README	2015-01-20 15:13:56 UTC (rev 8365)
@@ -14,6 +14,29 @@
 . Galaxy
 See Galaxy web page to know more about Galaxy installation.
 
+Swift is installed on Blues, so it is not required to be installed. In order to set up the Galaxy-Swift-dsp environment on Blues, follow these steps:
+
+1. Login to blues with ssh-tunnel port forwarding:
+
+ssh -L8080:localhost:8080 username at blues.lcrc.anl.gov  #replace username with your actual username on blues
+
+2. Install Galaxy:
+
+cp -r /home/ketan/galaxy-dist $HOME
+
+3. Start Galaxy:
+
+cd $HOME/galaxy-dist; sh run.sh
+
+After a while as Galaxy-python modules get loaded, a message as follows will appear:
+
+"serving on http://127.0.0.1:8080"
+
+4. Now, start a web browser on your local machine and point it to "localhost:8080"
+
+You should see the Galaxy interface. In the toolbar on the left, you should see dsp-swift tool.
+
+
 Screenshots
 ------------
 Following are some of the screenshots of the operational state of the jump-DSP package.

Modified: SwiftApps/dsp-swift/apps
===================================================================
--- SwiftApps/dsp-swift/apps	2015-01-20 14:59:02 UTC (rev 8364)
+++ SwiftApps/dsp-swift/apps	2015-01-20 15:13:56 UTC (rev 8365)
@@ -20,5 +20,5 @@
 localblues mpiexec mpiexec null null null
 localblues bash /bin/bash null null null
 localblues python /soft/python/2.7.6/bin/python null null null
-localblues dsp /lcrc/project/NEXTGENOPT/DSP/Dsp null null null
+localblues dsp /lcrc/project/NEXTGENOPT/Packages/bin/Dsp null null null
 localblues plotme /home/ketan/SwiftApps/dsp-swift/plotme null null null