[Swift-commit] r5936 - in SwiftApps/CMTS/scaling: . conf

[davidk at ci.uchicago.edu]

Author: davidk
Date: 2012-09-20 12:09:45 -0500 (Thu, 20 Sep 2012)
New Revision: 5936

Modified:
   SwiftApps/CMTS/scaling/conf/grotthuss.cf
   SwiftApps/CMTS/scaling/namd_wrapper.sh
Log:
Updated config for grotthuss


Modified: SwiftApps/CMTS/scaling/conf/grotthuss.cf
===================================================================
--- SwiftApps/CMTS/scaling/conf/grotthuss.cf	2012-09-20 15:45:29 UTC (rev 5935)
+++ SwiftApps/CMTS/scaling/conf/grotthuss.cf	2012-09-20 17:09:45 UTC (rev 5936)
@@ -1,6 +1,6 @@
 wrapperlog.always.transfer=true
 sitedir.keep=true
-execution.retries=10
+execution.retries=0
 lazy.errors=true
 status.mode=provider
 use.provider.staging=false
@@ -8,3 +8,4 @@
 use.wrapper.staging=false
 
 #app namd_wrapper=$PWD/../namd_wrapper.sh
+#app plot=$PWD/../plot.sh

Modified: SwiftApps/CMTS/scaling/namd_wrapper.sh
===================================================================
--- SwiftApps/CMTS/scaling/namd_wrapper.sh	2012-09-20 15:45:29 UTC (rev 5935)
+++ SwiftApps/CMTS/scaling/namd_wrapper.sh	2012-09-20 17:09:45 UTC (rev 5936)
@@ -5,4 +5,4 @@
 
 echo Arguments are: $@
 sed -e "s/_JOB_/$numNodes/g" h0_eq.conf > $namdConf
-mpiexec namd2 $namdConf
+mpiexec -machinefile $PBS_NODEFILE namd2 $namdConf