[Swift-commit] r4297 - SwiftApps/modFTdock

[ketan at ci.uchicago.edu]

Author: ketan
Date: 2011-04-06 16:02:14 -0500 (Wed, 06 Apr 2011)
New Revision: 4297

Modified:
   SwiftApps/modFTdock/ftdock.swift
Log:
 options to put input and output folders from commandline 

Modified: SwiftApps/modFTdock/ftdock.swift
===================================================================
--- SwiftApps/modFTdock/ftdock.swift	2011-04-06 20:50:53 UTC (rev 4296)
+++ SwiftApps/modFTdock/ftdock.swift	2011-04-06 21:02:14 UTC (rev 4297)
@@ -26,14 +26,14 @@
 {
   trace( str_root );
 
-  string str_file_static = @strcat( "input/", str_root, ".pdb" );
+  string str_file_static = @strcat( @arg("in", "input/"), str_root, ".pdb" );
   string str_file_mobile = "input/4TRA.pdb";
 
   file_pdb file_static < single_file_mapper; file = str_file_static >;
   file_pdb file_mobile < single_file_mapper; file = str_file_mobile >;
   file_dat dat_files[] < simple_mapper;
                               padding = 3,
-                              location = "output",
+                              location = @arg("out", "output"),
 			      prefix  = @strcat( str_root, "_" ),
 			      suffix  = ".dat" >;