[petsc-users] ParMmg crashes when run in parallel: Assertion failed: (isfinite(dd)), function PMMG_hashNorver_normals, file analys_pmmg.c, line 1072
Zongze Yang
yangzongze at gmail.com
Mon Oct 7 09:45:53 CDT 2024
Hi PETSc team,
I noticed that the ParMmg interface for overlap (https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7593__;!!G_uCfscf7eWS!bh5eQHxA8QXn10TtTUOI5lmjFbfxFBtZz9CQoiYgyZSR7oDMYp8NK2HHP2UaWRXmU82ddDBpMx3ctAfX8GFQAuL_$ ) has been fixed. I tried using the updated version in my code, but it did not perform as expected when refining the attached mesh (or fine mesh of the same geometry) in parallel.
Here are the details output: The first two sequential runs work correctly. However, when running the code in parallel without refinement, some warnings are generated. After refining the mesh in parallel, the code crashes.
```
❯ mpiexec -n 1 python test_adapt.py -dm_adaptor parmmg
❯ mpiexec -n 1 python test_adapt.py -dm_adaptor parmmg -refine 1
❯ mpiexec -n 2 python test_adapt.py -dm_adaptor parmmg
## Warning: MMG5_interpreg_ani: 608: unexpected case (null normal), impossible interpolation.
## Warning: MMG5_movbdyregpt_ani: unable to compute optimal position for at least 1 point.
## Warning: MMG5_interpreg_ani: 608: unexpected case (null normal), impossible interpolation.
## Warning: MMG5_movbdyregpt_ani: unable to compute optimal position for at least 1 point.
❯ mpiexec -n 2 python test_adapt.py -dm_adaptor parmmg -refine 1
Assertion failed: (isfinite(dd)), function PMMG_hashNorver_normals, file analys_pmmg.c, line 1072.
Assertion failed: (isfinite(dd)), function PMMG_hashNorver_normals, file analys_pmmg.c, line 1072.
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 22704 RUNNING AT yzzs-mac.local
= EXIT CODE: 6
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Abort trap: 6 (signal 6)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
❯ mpiexec -n 2 python test_adapt.py -dm_adaptor parmmg -overlap
## Warning: MMG5_interpreg_ani: 608: unexpected case (null normal), impossible interpolation.
## Warning: MMG5_movbdyregpt_ani: unable to compute optimal position for at least 1 point.
## Warning: MMG5_interpreg_ani: 608: unexpected case (null normal), impossible interpolation.
## Warning: MMG5_movbdyregpt_ani: unable to compute optimal position for at least 1 point.
❯ mpiexec -n 2 python test_adapt.py -dm_adaptor parmmg -overlap -refine
Assertion failed: (isfinite(dd)), function PMMG_hashNorver_normals, file analys_pmmg.c, line 1072.
Assertion failed: (isfinite(dd)), function PMMG_hashNorver_normals, file analys_pmmg.c, line 1072.
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 25424 RUNNING AT yzzs-mac.local
= EXIT CODE: 6
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Abort trap: 6 (signal 6)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
```
The mesh geometry is a cylinder with an interface. The geometry file of gmsh, the mesh file, and the code are attached. Could someone take a look and help identify the issue?
Thank you!
Best regards,
Zongze
-------------- next part --------------
A non-text attachment was scrubbed...
Name: cylinder_test.msh
Type: application/octet-stream
Size: 70782 bytes
Desc: not available
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20241007/71cbd3a1/attachment-0002.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: test_adapt.py
Type: text/x-python-script
Size: 1388 bytes
Desc: not available
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20241007/71cbd3a1/attachment-0001.bin>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: geometry.png
Type: image/png
Size: 81097 bytes
Desc: not available
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20241007/71cbd3a1/attachment-0001.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: cylinder.geo
Type: application/octet-stream
Size: 714 bytes
Desc: not available
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20241007/71cbd3a1/attachment-0003.obj>
-------------- next part --------------
More information about the petsc-users
mailing list