[petsc-users] Unable to configure errors

Satish Balay balay.anl at fastmail.org
Mon Nov 25 11:13:32 CST 2024


Please check: "Intel MPI" section of https://urldefense.us/v3/__https://petsc.org/release/install/install/*mpi__;Iw!!G_uCfscf7eWS!efneLerzMMPsXXWgEwlvn6Pdk_8YCIiz8n_VrMaeIB4E4gWzmx9BZKrY5NGR48MVdQ60BU43oXs8ZhXN5BIN9zu690s$   - Likely you need to correctly set I_MPI_CC etc. for the MPI compiler wrappers to work.

If you still have issues -  send configure.log from this failure.

Satish

On Mon, 25 Nov 2024, Brian Bainbridge - BGS via petsc-users wrote:

> Hi there,
> 
> I have downloaded petsc-.3.22.1 via git, but when I try to configure with the Intel compilers I get this message:
> 
> [bba at kwvmxbridgeHPC petsc]$ ./configure --prefix=/home/bba/bin/petsc --with-mpi-dir=/home/bba/intel/oneapi/mpi/2021.14/
> =============================================================================================
>                          Configuring PETSc to compile on your system
> =============================================================================================
> TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1457)
> *********************************************************************************************
>            UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> ---------------------------------------------------------------------------------------------
>   MPI compiler wrappers in /home/bba/intel/oneapi/mpi/2021.14/bin cannot be found or do not
>   work. See https://urldefense.us/v3/__https://petsc.org/release/faq/*invalid-mpi-compilers__;Iw!!G_uCfscf7eWS!bfBTBf0cnZ3REM41nHH1ecadhkhaOZ6Rj28ZmTt_QbyHuPvU3zdMDIVstg8C0aON_dJ-vLme96MmkQ_-tKw$ 
> *********************************************************************************************
> 
> But:
> 
> [bba at kwvmxbridgeHPC petsc]$ ls /home/bba/intel/oneapi/mpi/2021.14/bin
> cpuinfo             hydra_nameserver  IMB-MPI1      IMB-MT   IMB-P2P  impi_cpuinfo  mpicc   mpiexec        mpif77  mpifc   mpigxx  mpiicpc  mpiicx    mpiifx  mpitune_fast
> hydra_bstrap_proxy  hydra_pmi_proxy   IMB-MPI1-GPU  IMB-NBC  IMB-RMA  impi_info     mpicxx  mpiexec.hydra  mpif90  mpigcc  mpiicc  mpiicpx  mpiifort  mpirun
> 
> So it should work, but it doesn't! I tried to use --with-cc=/home/bba/intel/oneapi/mpi/2021.14/bin/mpiicx
> 
> but that doesn't work:
> 
> [bba at kwvmxbridgeHPC petsc]$ ./configure --prefix=/home/bba/bin/petsc --with-cc=/home/bba/intel/oneapi/mpi/2021.14/bin/mpiicx
> =============================================================================================
>                          Configuring PETSc to compile on your system
> =============================================================================================
> TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1457)
> *********************************************************************************************
>            UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> ---------------------------------------------------------------------------------------------
>   C compiler you provided with -with-cc=/home/bba/intel/oneapi/mpi/2021.14/bin/mpiicx
>   cannot be found or does not work.
>   If the above linker messages do not indicate failure of the compiler you can rerun with
>   the option --ignoreLinkOutput=1
> *********************************************************************************************
> 
> [bba at kwvmxbridgeHPC petsc]$ ls /home/bba/intel/oneapi/mpi/2021.14/bin/mpiicx
> /home/bba/intel/oneapi/mpi/2021.14/bin/mpiicx
> 
> The compiler is there, can you please help me to configure the petsc please?
> 
> Regards,
> Brian
> 
> 
> 
> 
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> 



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