[petsc-users] Install PETSc with option `--with-shared-libraries=1` failed on MacOS
Zongze Yang
yangzongze at gmail.com
Sun Mar 17 11:50:08 CDT 2024
It can be resolved by adding CFLAGS=-Wno-int-conversion. Perhaps the default behaviour of the new version compiler has been changed?
Best wishes,
Zongze
> On 18 Mar 2024, at 00:23, Satish Balay <balay at mcs.anl.gov> wrote:
>
> Hm - I just tried a build with balay/xcode15-mpich - and that goes through fine for me. So don't know what the difference here is.
>
> One difference is - I have a slightly older xcode. However your compiler appears to behave as using -Werror. Perhaps CFLAGS=-Wno-int-conversion will help here?
>
> Satish
>
> ----
> Executing: gcc --version
> stdout:
> Apple clang version 15.0.0 (clang-1500.3.9.4)
>
> Executing: /Users/zzyang/workspace/repos/petsc/arch-darwin-c-debug/bin/mpicc -show
> stdout: gcc -fPIC -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -fno-common -I/Users/zzyang/workspace/repos/petsc/arch-darwin-c-debug/include -L/Users/zzyang/workspace/repos/petsc/arch-darwin-c-debug/lib -lmpi -lpmpi
>
> /Users/zzyang/workspace/repos/petsc/arch-darwin-c-debug/bin/mpicc -O2 -DMAX_STACK_ALLOC=2048 -Wall -DF_INTERFACE_GFORT -fPIC -DNO_WARMUP -DMAX_CPU_NUMBER=12 -DMAX_PARALLEL_NUMBER=1 -DBUILD_SINGLE=1 -DBUILD_DOUBLE=1 -DBUILD_COMPLEX=1 -DBUILD_COMPLEX16=1 -DVERSION=\"0.3.21\" -march=armv8-a -UASMNAME -UASMFNAME -UNAME -UCNAME -UCHAR_NAME -UCHAR_CNAME -DASMNAME=_lapack_wrappers -DASMFNAME=_lapack_wrappers_ -DNAME=lapack_wrappers_ -DCNAME=lapack_wrappers -DCHAR_NAME=\"lapack_wrappers_\" -DCHAR_CNAME=\"lapack_wrappers\" -DNO_AFFINITY -I.. -c src/lapack_wrappers.c -o src/lapack_wrappers.o
> src/lapack_wrappers.c:570:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> ^~~~
> &
>
> vs:
> Executing: gcc --version
> stdout:
> Apple clang version 15.0.0 (clang-1500.1.0.2.5)
>
> Executing: /Users/balay/petsc/arch-darwin-c-debug/bin/mpicc -show
> stdout: gcc -fPIC -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -fno-common -I/Users/balay/petsc/arch-darwin-c-debug/include -L/Users/balay/petsc/arch-darwin-c-debug/lib -lmpi -lpmpi
>
>
> /Users/balay/petsc/arch-darwin-c-debug/bin/mpicc -O2 -DMAX_STACK_ALLOC=2048 -Wall -DF_INTERFACE_GFORT -fPIC -DNO_WARMUP -DMAX_CPU_NUMBER=24 -DMAX_PARALLEL_NUMBER=1 -DBUILD_SINGLE=1 -DBUILD_DOUBLE=1 -DBUILD_COMPLEX=1 -DBUILD_COMPLEX16=1 -DVERSION=\"0.3.21\" -march=armv8-a -UASMNAME -UASMFNAME -UNAME -UCNAME -UCHAR_NAME -UCHAR_CNAME -DASMNAME=_lapack_wrappers -DASMFNAME=_lapack_wrappers_ -DNAME=lapack_wrappers_ -DCNAME=lapack_wrappers -DCHAR_NAME=\"lapack_wrappers_\" -DCHAR_CNAME=\"lapack_wrappers\" -DNO_AFFINITY -I.. -c src/lapack_wrappers.c -o src/lapack_wrappers.o
> src/lapack_wrappers.c:570:81: warning: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> ^~~~
> &
>
>
>
>
> On Sun, 17 Mar 2024, Pierre Jolivet wrote:
>
>> Ah, my bad, I misread linux-opt-arm as a macOS runner, no wonder the option is not helping…
>> Take Barry’s advice.
>> Furthermore, it looks like OpenBLAS people are steering in the opposite direction as us, by forcing the use of ld-classic https://urldefense.us/v3/__https://github.com/OpenMathLib/OpenBLAS/commit/103d6f4e42fbe532ae4ea48e8d90d7d792bc93d2__;!!G_uCfscf7eWS!bY2l3X9Eb5PRzNQYrfPFXhgcUodHCiDinhQYga0PeQn1IQzJYD376fk-pZfktGAkpTvBmzy7BFDc9SrazFoooQ$ , so that’s another good argument in favor of -framework Accelerate.
>>
>> Thanks,
>> Pierre
>>
>> PS: anyone benchmarked those https://urldefense.us/v3/__https://developer.apple.com/documentation/accelerate/sparse_solvers__;!!G_uCfscf7eWS!bY2l3X9Eb5PRzNQYrfPFXhgcUodHCiDinhQYga0PeQn1IQzJYD376fk-pZfktGAkpTvBmzy7BFDc9SrpnDvT5g$ ? I didn’t even know they existed.
>>
>>> On 17 Mar 2024, at 3:06 PM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>
>>> This Message Is From an External Sender
>>> This message came from outside your organization.
>>> Understood. Thank you for your advice.
>>>
>>> Best wishes,
>>> Zongze
>>>
>>>> On 17 Mar 2024, at 22:04, Barry Smith <bsmith at petsc.dev <mailto:bsmith at petsc.dev> <mailto:bsmith at petsc.dev>> wrote:
>>>>
>>>>
>>>> I would just avoid the --download-openblas option. The BLAS/LAPACK provided by Apple should perform fine, perhaps even better than OpenBLAS on your system.
>>>>
>>>>
>>>>> On Mar 17, 2024, at 9:58 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com> <mailto:yangzongze at gmail.com>> wrote:
>>>>>
>>>>> This Message Is From an External Sender
>>>>> This message came from outside your organization.
>>>>> Adding the flag `--download-openblas-make-options=TARGET=GENERIC` did not resolve the issue. The same error persisted.
>>>>>
>>>>> Best wishes,
>>>>> Zongze
>>>>>
>>>>>> On 17 Mar 2024, at 20:58, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et> <mailto:pierre at joliv.et>> wrote:
>>>>>>
>>>>>>
>>>>>>
>>>>>>> On 17 Mar 2024, at 1:04 PM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com> <mailto:yangzongze at gmail.com>> wrote:
>>>>>>>
>>>>>>> Thank you for providing the instructions. I try the first option.
>>>>>>>
>>>>>>> Now, the error of the configuration is related to OpenBLAS.
>>>>>>> Add `--CFLAGS=-Wno-int-conversion` to configure command resolve this. Should this be reported to OpenBLAS? Or need to fix the configure in petsc?
>>>>>>
>>>>>> I see our linux-opt-arm runner is using the additional flag '--download-openblas-make-options=TARGET=GENERIC', could you maybe try to add that as well?
>>>>>> I don’t think there is much to fix on our end, OpenBLAS has been very broken lately on arm (current version is 0.3.26 but we can’t update because there is a huge performance regression which makes the pipeline timeout).
>>>>>>
>>>>>> Thanks,
>>>>>> Pierre
>>>>>>
>>>>>>>
>>>>>>> The configure.log is attached. The errors are show below:
>>>>>>> ```
>>>>>>> src/lapack_wrappers.c:570:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>>>>> RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>>>>> ^~~~
>>>>>>> &
>>>>>>> src/../inc/relapack.h:74:216: note: passing argument to parameter here
>>>>>>> void RELAPACK_sgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
>>>>>>> ^
>>>>>>> src/lapack_wrappers.c:583:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>>>>> RELAPACK_dgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>>>>> ^~~~
>>>>>>> &
>>>>>>> src/../inc/relapack.h:75:221: note: passing argument to parameter here
>>>>>>> void RELAPACK_dgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
>>>>>>> ^
>>>>>>> src/lapack_wrappers.c:596:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>>>>> RELAPACK_cgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>>>>> ^~~~
>>>>>>> &
>>>>>>> src/../inc/relapack.h:76:216: note: passing argument to parameter here
>>>>>>> void RELAPACK_cgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
>>>>>>> ^
>>>>>>> src/lapack_wrappers.c:609:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>>>>> RELAPACK_zgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>>>>> ^~~~
>>>>>>> &
>>>>>>> src/../inc/relapack.h:77:221: note: passing argument to parameter here
>>>>>>> void RELAPACK_zgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
>>>>>>> ^
>>>>>>> 4 errors generated.
>>>>>>> ```
>>>>>>>
>>>>>>> Best wishes,
>>>>>>> Zongze
>>>>>>>
>>>>>>> <configure.log.tar.gz>
>>>>>>>
>>>>>>>> On 17 Mar 2024, at 18:48, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et> <mailto:pierre at joliv.et>> wrote:
>>>>>>>>
>>>>>>>> You need this MR https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!bY2l3X9Eb5PRzNQYrfPFXhgcUodHCiDinhQYga0PeQn1IQzJYD376fk-pZfktGAkpTvBmzy7BFDc9SqG8HOUGQ$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OF94HpwQ$>
>>>>>>>> main has been broken for macOS since https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!bY2l3X9Eb5PRzNQYrfPFXhgcUodHCiDinhQYga0PeQn1IQzJYD376fk-pZfktGAkpTvBmzy7BFDc9Soe8Kh_uQ$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OIhlJwLx$>, so the alternative is to revert to the commit prior.
>>>>>>>> It should work either way.
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Pierre
>>>>>>>>
>>>>>>>>> On 17 Mar 2024, at 11:31 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com> <mailto:yangzongze at gmail.com>> wrote:
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> This Message Is From an External Sender
>>>>>>>>> This message came from outside your organization.
>>>>>>>>> Hi, PETSc Team,
>>>>>>>>>
>>>>>>>>> I am trying to install petsc with the following configuration
>>>>>>>>> ```
>>>>>>>>> ./configure \
>>>>>>>>> --download-bison \
>>>>>>>>> --download-mpich \
>>>>>>>>> --download-mpich-configure-arguments=--disable-opencl \
>>>>>>>>> --download-hwloc \
>>>>>>>>> --download-hwloc-configure-arguments=--disable-opencl \
>>>>>>>>> --download-openblas \
>>>>>>>>> --download-openblas-make-options="'USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'" \
>>>>>>>>> --with-shared-libraries=1 \
>>>>>>>>> --with-fortran-bindings=0 \
>>>>>>>>> --with-zlib \
>>>>>>>>> LDFLAGS=-Wl,-ld_classic
>>>>>>>>> ```
>>>>>>>>>
>>>>>>>>> The log shows that
>>>>>>>>> ```
>>>>>>>>> Exhausted all shared linker guesses. Could not determine how to create a shared library!
>>>>>>>>> ```
>>>>>>>>>
>>>>>>>>> I recently updated the system and Xcode, as well as homebrew.
>>>>>>>>>
>>>>>>>>> The configure.log is attached.
>>>>>>>>>
>>>>>>>>> Thanks for your attention to this matter.
>>>>>>>>>
>>>>>>>>> Best wishes,
>>>>>>>>> Zongze
>>>>>>>>> <configure.log.tar.gz>
>>
> <configure.log.gz>
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