[petsc-users] Install PETSc with option `--with-shared-libraries=1` failed on MacOS
Satish Balay
balay at mcs.anl.gov
Sun Mar 17 11:23:10 CDT 2024
Hm - I just tried a build with balay/xcode15-mpich - and that goes through fine for me. So don't know what the difference here is.
One difference is - I have a slightly older xcode. However your compiler appears to behave as using -Werror. Perhaps CFLAGS=-Wno-int-conversion will help here?
Satish
----
Executing: gcc --version
stdout:
Apple clang version 15.0.0 (clang-1500.3.9.4)
Executing: /Users/zzyang/workspace/repos/petsc/arch-darwin-c-debug/bin/mpicc -show
stdout: gcc -fPIC -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -fno-common -I/Users/zzyang/workspace/repos/petsc/arch-darwin-c-debug/include -L/Users/zzyang/workspace/repos/petsc/arch-darwin-c-debug/lib -lmpi -lpmpi
/Users/zzyang/workspace/repos/petsc/arch-darwin-c-debug/bin/mpicc -O2 -DMAX_STACK_ALLOC=2048 -Wall -DF_INTERFACE_GFORT -fPIC -DNO_WARMUP -DMAX_CPU_NUMBER=12 -DMAX_PARALLEL_NUMBER=1 -DBUILD_SINGLE=1 -DBUILD_DOUBLE=1 -DBUILD_COMPLEX=1 -DBUILD_COMPLEX16=1 -DVERSION=\"0.3.21\" -march=armv8-a -UASMNAME -UASMFNAME -UNAME -UCNAME -UCHAR_NAME -UCHAR_CNAME -DASMNAME=_lapack_wrappers -DASMFNAME=_lapack_wrappers_ -DNAME=lapack_wrappers_ -DCNAME=lapack_wrappers -DCHAR_NAME=\"lapack_wrappers_\" -DCHAR_CNAME=\"lapack_wrappers\" -DNO_AFFINITY -I.. -c src/lapack_wrappers.c -o src/lapack_wrappers.o
src/lapack_wrappers.c:570:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
^~~~
&
vs:
Executing: gcc --version
stdout:
Apple clang version 15.0.0 (clang-1500.1.0.2.5)
Executing: /Users/balay/petsc/arch-darwin-c-debug/bin/mpicc -show
stdout: gcc -fPIC -fno-stack-check -Qunused-arguments -g -O0 -Wno-implicit-function-declaration -fno-common -I/Users/balay/petsc/arch-darwin-c-debug/include -L/Users/balay/petsc/arch-darwin-c-debug/lib -lmpi -lpmpi
/Users/balay/petsc/arch-darwin-c-debug/bin/mpicc -O2 -DMAX_STACK_ALLOC=2048 -Wall -DF_INTERFACE_GFORT -fPIC -DNO_WARMUP -DMAX_CPU_NUMBER=24 -DMAX_PARALLEL_NUMBER=1 -DBUILD_SINGLE=1 -DBUILD_DOUBLE=1 -DBUILD_COMPLEX=1 -DBUILD_COMPLEX16=1 -DVERSION=\"0.3.21\" -march=armv8-a -UASMNAME -UASMFNAME -UNAME -UCNAME -UCHAR_NAME -UCHAR_CNAME -DASMNAME=_lapack_wrappers -DASMFNAME=_lapack_wrappers_ -DNAME=lapack_wrappers_ -DCNAME=lapack_wrappers -DCHAR_NAME=\"lapack_wrappers_\" -DCHAR_CNAME=\"lapack_wrappers\" -DNO_AFFINITY -I.. -c src/lapack_wrappers.c -o src/lapack_wrappers.o
src/lapack_wrappers.c:570:81: warning: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
^~~~
&
On Sun, 17 Mar 2024, Pierre Jolivet wrote:
> Ah, my bad, I misread linux-opt-arm as a macOS runner, no wonder the option is not helping…
> Take Barry’s advice.
> Furthermore, it looks like OpenBLAS people are steering in the opposite direction as us, by forcing the use of ld-classic https://urldefense.us/v3/__https://github.com/OpenMathLib/OpenBLAS/commit/103d6f4e42fbe532ae4ea48e8d90d7d792bc93d2__;!!G_uCfscf7eWS!bY2l3X9Eb5PRzNQYrfPFXhgcUodHCiDinhQYga0PeQn1IQzJYD376fk-pZfktGAkpTvBmzy7BFDc9SrazFoooQ$ , so that’s another good argument in favor of -framework Accelerate.
>
> Thanks,
> Pierre
>
> PS: anyone benchmarked those https://urldefense.us/v3/__https://developer.apple.com/documentation/accelerate/sparse_solvers__;!!G_uCfscf7eWS!bY2l3X9Eb5PRzNQYrfPFXhgcUodHCiDinhQYga0PeQn1IQzJYD376fk-pZfktGAkpTvBmzy7BFDc9SrpnDvT5g$ ? I didn’t even know they existed.
>
> > On 17 Mar 2024, at 3:06 PM, Zongze Yang <yangzongze at gmail.com> wrote:
> >
> > This Message Is From an External Sender
> > This message came from outside your organization.
> > Understood. Thank you for your advice.
> >
> > Best wishes,
> > Zongze
> >
> >> On 17 Mar 2024, at 22:04, Barry Smith <bsmith at petsc.dev <mailto:bsmith at petsc.dev>> wrote:
> >>
> >>
> >> I would just avoid the --download-openblas option. The BLAS/LAPACK provided by Apple should perform fine, perhaps even better than OpenBLAS on your system.
> >>
> >>
> >>> On Mar 17, 2024, at 9:58 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
> >>>
> >>> This Message Is From an External Sender
> >>> This message came from outside your organization.
> >>> Adding the flag `--download-openblas-make-options=TARGET=GENERIC` did not resolve the issue. The same error persisted.
> >>>
> >>> Best wishes,
> >>> Zongze
> >>>
> >>>> On 17 Mar 2024, at 20:58, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et>> wrote:
> >>>>
> >>>>
> >>>>
> >>>>> On 17 Mar 2024, at 1:04 PM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
> >>>>>
> >>>>> Thank you for providing the instructions. I try the first option.
> >>>>>
> >>>>> Now, the error of the configuration is related to OpenBLAS.
> >>>>> Add `--CFLAGS=-Wno-int-conversion` to configure command resolve this. Should this be reported to OpenBLAS? Or need to fix the configure in petsc?
> >>>>
> >>>> I see our linux-opt-arm runner is using the additional flag '--download-openblas-make-options=TARGET=GENERIC', could you maybe try to add that as well?
> >>>> I don’t think there is much to fix on our end, OpenBLAS has been very broken lately on arm (current version is 0.3.26 but we can’t update because there is a huge performance regression which makes the pipeline timeout).
> >>>>
> >>>> Thanks,
> >>>> Pierre
> >>>>
> >>>>>
> >>>>> The configure.log is attached. The errors are show below:
> >>>>> ```
> >>>>> src/lapack_wrappers.c:570:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> >>>>> RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> >>>>> ^~~~
> >>>>> &
> >>>>> src/../inc/relapack.h:74:216: note: passing argument to parameter here
> >>>>> void RELAPACK_sgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
> >>>>> ^
> >>>>> src/lapack_wrappers.c:583:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> >>>>> RELAPACK_dgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> >>>>> ^~~~
> >>>>> &
> >>>>> src/../inc/relapack.h:75:221: note: passing argument to parameter here
> >>>>> void RELAPACK_dgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
> >>>>> ^
> >>>>> src/lapack_wrappers.c:596:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> >>>>> RELAPACK_cgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> >>>>> ^~~~
> >>>>> &
> >>>>> src/../inc/relapack.h:76:216: note: passing argument to parameter here
> >>>>> void RELAPACK_cgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
> >>>>> ^
> >>>>> src/lapack_wrappers.c:609:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
> >>>>> RELAPACK_zgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
> >>>>> ^~~~
> >>>>> &
> >>>>> src/../inc/relapack.h:77:221: note: passing argument to parameter here
> >>>>> void RELAPACK_zgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
> >>>>> ^
> >>>>> 4 errors generated.
> >>>>> ```
> >>>>>
> >>>>> Best wishes,
> >>>>> Zongze
> >>>>>
> >>>>> <configure.log.tar.gz>
> >>>>>
> >>>>>> On 17 Mar 2024, at 18:48, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et>> wrote:
> >>>>>>
> >>>>>> You need this MR https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!bY2l3X9Eb5PRzNQYrfPFXhgcUodHCiDinhQYga0PeQn1IQzJYD376fk-pZfktGAkpTvBmzy7BFDc9SqG8HOUGQ$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OF94HpwQ$>
> >>>>>> main has been broken for macOS since https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!bY2l3X9Eb5PRzNQYrfPFXhgcUodHCiDinhQYga0PeQn1IQzJYD376fk-pZfktGAkpTvBmzy7BFDc9Soe8Kh_uQ$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OIhlJwLx$>, so the alternative is to revert to the commit prior.
> >>>>>> It should work either way.
> >>>>>>
> >>>>>> Thanks,
> >>>>>> Pierre
> >>>>>>
> >>>>>>> On 17 Mar 2024, at 11:31 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
> >>>>>>>
> >>>>>>>
> >>>>>>> This Message Is From an External Sender
> >>>>>>> This message came from outside your organization.
> >>>>>>> Hi, PETSc Team,
> >>>>>>>
> >>>>>>> I am trying to install petsc with the following configuration
> >>>>>>> ```
> >>>>>>> ./configure \
> >>>>>>> --download-bison \
> >>>>>>> --download-mpich \
> >>>>>>> --download-mpich-configure-arguments=--disable-opencl \
> >>>>>>> --download-hwloc \
> >>>>>>> --download-hwloc-configure-arguments=--disable-opencl \
> >>>>>>> --download-openblas \
> >>>>>>> --download-openblas-make-options="'USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'" \
> >>>>>>> --with-shared-libraries=1 \
> >>>>>>> --with-fortran-bindings=0 \
> >>>>>>> --with-zlib \
> >>>>>>> LDFLAGS=-Wl,-ld_classic
> >>>>>>> ```
> >>>>>>>
> >>>>>>> The log shows that
> >>>>>>> ```
> >>>>>>> Exhausted all shared linker guesses. Could not determine how to create a shared library!
> >>>>>>> ```
> >>>>>>>
> >>>>>>> I recently updated the system and Xcode, as well as homebrew.
> >>>>>>>
> >>>>>>> The configure.log is attached.
> >>>>>>>
> >>>>>>> Thanks for your attention to this matter.
> >>>>>>>
> >>>>>>> Best wishes,
> >>>>>>> Zongze
> >>>>>>> <configure.log.tar.gz>
>
>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: configure.log.gz
Type: application/gzip
Size: 1365006 bytes
Desc:
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20240317/c0cfe0e8/attachment-0001.bin>
More information about the petsc-users
mailing list