[petsc-users] Using multiple MPI ranks with COO interface crashes in some cases

[Fackler, Philip]

In Xolotl's "feature-petsc-kokkos" branch, I have moved our code to use the COO interface for preallocating and setting values in the Jacobian matrix. I have found that with some of our test cases, using more than one MPI rank results in a crash. Way down in the preconditioner code in petsc a Mat gets computed that has "null" for the "productsymbolic" member of its "ops". It's pretty far removed from where we compute the Jacobian entries, so I haven't been able (so far) to track it back to an error in my code. I'd appreciate some help with this from someone who is more familiar with the petsc guts so we can figure out what I'm doing wrong. (I'm assuming it's a bug in Xolotl.)

Note that this is using the kokkos backend for Mat and Vec in petsc, but with a serial-only build of kokkos and kokkos-kernels. So, it's a CPU-only multiple MPI rank run.

Here's a paste of the error output showing the relevant parts of the call stack:

[ERROR] [0]PETSC ERROR:
[ERROR] --------------------- Error Message --------------------------------------------------------------
[ERROR] [1]PETSC ERROR:
[ERROR] --------------------- Error Message --------------------------------------------------------------
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] No support for this operation for this object type
[ERROR] [1]PETSC ERROR:
[ERROR] No support for this operation for this object type
[ERROR] [0]PETSC ERROR:
[ERROR] No method productsymbolic for Mat of type (null)
[ERROR] No method productsymbolic for Mat of type (null)
[ERROR] [0]PETSC ERROR:
[ERROR] [1]PETSC ERROR:
[ERROR] See https://petsc.org/release/faq/ for trouble shooting.
[ERROR] See https://petsc.org/release/faq/ for trouble shooting.
[ERROR] [0]PETSC ERROR:
[ERROR] [1]PETSC ERROR:
[ERROR] Petsc Development GIT revision: v3.18.1-115-gdca010e0e9a  GIT Date: 2022-10-28 14:39:41 +0000
[ERROR] Petsc Development GIT revision: v3.18.1-115-gdca010e0e9a  GIT Date: 2022-10-28 14:39:41 +0000
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] Unknown Name on a  named PC0115427 by 4pf Mon Nov 14 13:22:01 2022
[ERROR] Unknown Name on a  named PC0115427 by 4pf Mon Nov 14 13:22:01 2022
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] Configure options PETSC_DIR=/home/4pf/repos/petsc PETSC_ARCH=arch-kokkos-serial-debug --with-debugging=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cudac=0 --prefix=/home/4pf/build/petsc/serial-debug/install --with-64-bit-indices --with-shared-libraries --with-kokkos-dir=/home/4pf/build/kokkos/serial/install --with-kokkos-kernels-dir=/home/4pf/build/kokkos-kernels/serial/install
[ERROR] Configure options PETSC_DIR=/home/4pf/repos/petsc PETSC_ARCH=arch-kokkos-serial-debug --with-debugging=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=0 --with-cudac=0 --prefix=/home/4pf/build/petsc/serial-debug/install --with-64-bit-indices --with-shared-libraries --with-kokkos-dir=/home/4pf/build/kokkos/serial/install --with-kokkos-kernels-dir=/home/4pf/build/kokkos-kernels/serial/install
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #1 MatProductSymbolic_MPIAIJKokkos_AB() at /home/4pf/repos/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx:918
[ERROR] #1 MatProductSymbolic_MPIAIJKokkos_AB() at /home/4pf/repos/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx:918
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #2 MatProductSymbolic_MPIAIJKokkos() at /home/4pf/repos/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx:1138
[ERROR] #2 MatProductSymbolic_MPIAIJKokkos() at /home/4pf/repos/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx:1138
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #3 MatProductSymbolic() at /home/4pf/repos/petsc/src/mat/interface/matproduct.c:793
[ERROR] #3 MatProductSymbolic() at /home/4pf/repos/petsc/src/mat/interface/matproduct.c:793
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #4 MatProduct_Private() at /home/4pf/repos/petsc/src/mat/interface/matrix.c:9820
[ERROR] #4 MatProduct_Private() at /home/4pf/repos/petsc/src/mat/interface/matrix.c:9820
[ERROR] [0]PETSC ERROR:
[ERROR] [1]PETSC ERROR:
[ERROR] #5 MatMatMult() at /home/4pf/repos/petsc/src/mat/interface/matrix.c:9897
[ERROR] #5 MatMatMult() at /home/4pf/repos/petsc/src/mat/interface/matrix.c:9897
[ERROR] [0]PETSC ERROR:
[ERROR] [1]PETSC ERROR:
[ERROR] #6 PCGAMGOptProlongator_AGG() at /home/4pf/repos/petsc/src/ksp/pc/impls/gamg/agg.c:769
[ERROR] #6 PCGAMGOptProlongator_AGG() at /home/4pf/repos/petsc/src/ksp/pc/impls/gamg/agg.c:769
[ERROR] [0]PETSC ERROR:
[ERROR] [1]PETSC ERROR:
[ERROR] #7 PCSetUp_GAMG() at /home/4pf/repos/petsc/src/ksp/pc/impls/gamg/gamg.c:639
[ERROR] #7 PCSetUp_GAMG() at /home/4pf/repos/petsc/src/ksp/pc/impls/gamg/gamg.c:639
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #8 PCSetUp() at /home/4pf/repos/petsc/src/ksp/pc/interface/precon.c:994
[ERROR] #8 PCSetUp() at /home/4pf/repos/petsc/src/ksp/pc/interface/precon.c:994
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #9 KSPSetUp() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:406
[ERROR] #9 KSPSetUp() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:406
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #10 KSPSolve_Private() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:825
[ERROR] #10 KSPSolve_Private() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:825
[ERROR] [0]PETSC ERROR:
[ERROR] [1]PETSC ERROR:
[ERROR] #11 KSPSolve() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:1071
[ERROR] #11 KSPSolve() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:1071
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #12 PCApply_FieldSplit() at /home/4pf/repos/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c:1246
[ERROR] #12 PCApply_FieldSplit() at /home/4pf/repos/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c:1246
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #13 PCApply() at /home/4pf/repos/petsc/src/ksp/pc/interface/precon.c:441
[ERROR] #13 PCApply() at /home/4pf/repos/petsc/src/ksp/pc/interface/precon.c:441
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #14 KSP_PCApply() at /home/4pf/repos/petsc/include/petsc/private/kspimpl.h:380
[ERROR] #14 KSP_PCApply() at /home/4pf/repos/petsc/include/petsc/private/kspimpl.h:380
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #15 KSPFGMRESCycle() at /home/4pf/repos/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c:152
[ERROR] #15 KSPFGMRESCycle() at /home/4pf/repos/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c:152
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #16 KSPSolve_FGMRES() at /home/4pf/repos/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c:273
[ERROR] #16 KSPSolve_FGMRES() at /home/4pf/repos/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c:273
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #17 KSPSolve_Private() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:899
[ERROR] #17 KSPSolve_Private() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:899
[ERROR] [0]PETSC ERROR:
[ERROR] [1]PETSC ERROR:
[ERROR] #18 KSPSolve() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:1071
[ERROR] #18 KSPSolve() at /home/4pf/repos/petsc/src/ksp/ksp/interface/itfunc.c:1071
[ERROR] [0]PETSC ERROR:
[ERROR] [1]PETSC ERROR:
[ERROR] #19 SNESSolve_NEWTONLS() at /home/4pf/repos/petsc/src/snes/impls/ls/ls.c:210
[ERROR] #19 SNESSolve_NEWTONLS() at /home/4pf/repos/petsc/src/snes/impls/ls/ls.c:210
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #20 SNESSolve() at /home/4pf/repos/petsc/src/snes/interface/snes.c:4689
[ERROR] #20 SNESSolve() at /home/4pf/repos/petsc/src/snes/interface/snes.c:4689
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #21 TSStep_ARKIMEX() at /home/4pf/repos/petsc/src/ts/impls/arkimex/arkimex.c:791
[ERROR] #21 TSStep_ARKIMEX() at /home/4pf/repos/petsc/src/ts/impls/arkimex/arkimex.c:791
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #22 TSStep() at /home/4pf/repos/petsc/src/ts/interface/ts.c:3445
[ERROR] #22 TSStep() at /home/4pf/repos/petsc/src/ts/interface/ts.c:3445
[ERROR] [1]PETSC ERROR:
[ERROR] [0]PETSC ERROR:
[ERROR] #23 TSSolve() at /home/4pf/repos/petsc/src/ts/interface/ts.c:3836
[ERROR] #23 TSSolve() at /home/4pf/repos/petsc/src/ts/interface/ts.c:3836
[ERROR] PetscSolver::solve: TSSolve failed.
[ERROR] PetscSolver::solve: TSSolve failed.
Aborting.
Aborting.



Thanks for the help,

Philip Fackler
Research Software Engineer, Application Engineering Group
Advanced Computing Systems Research Section
Computer Science and Mathematics Division
Oak Ridge National Laboratory
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