[petsc-users] Downloaded superlu_dist could not be used. Please check install in $PREFIX

[Fande Kong]

Thanks, Sherry, and Satish,

I will try your suggestion, and report back to you as soon as possible.

Thanks,

Fande

On Tue, Jan 18, 2022 at 10:48 PM Satish Balay <balay at mcs.anl.gov> wrote:

> Sherry,
>
> This is with superlu-dist-7.1.1 [not master branch]
>
>
> Fande,
>
> >>>>>>
> Executing: mpifort  -o /tmp/petsc-UYa6A8/config.compilers/conftest
> -fopenmp -fopenmp  -I$PREFIX/include -fPIC -O3  -fopenmp
> /tmp/petsc-UYa6A8/config.compilers/conftest.o
> /tmp/petsc-UYa6A8/config.compilers/confc.o  -Wl,-rpath,$PREFIX/lib
> -L$PREFIX/lib -lsuperlu_dist -lpthread -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib
> -lparmetis -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib -lmetis
> -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib -lflapack -Wl,-rpath,$PREFIX/lib
> -L$PREFIX/lib -lfblas -lm -Wl,-rpath,$BUILD_PREFIX/lib -L$BUILD_PREFIX/lib
> -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm
> -Wl,-rpath,$BUILD_PREFIX/lib/gcc/x86_64-conda-linux-gnu/9.3.0
> -L$BUILD_PREFIX/lib/gcc/x86_64-conda-linux-gnu/9.3.0
> -Wl,-rpath,$BUILD_PREFIX/lib/gcc -L$BUILD_PREFIX/lib/gcc
> -Wl,-rpath,$BUILD_PREFIX/x86_64-conda-linux-gnu/lib
> -L$BUILD_PREFIX/x86_64-conda-linux-gnu/lib -Wl,-rpath,$BUILD_PREFIX/lib
> -lgfortran -lm -lgcc_s -lquadmath -lrt -lquadmath -lstdc++ -ldl
> Possible ERROR while running linker:
> stderr:
> $BUILD_PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/9.3.0/../../../../x86_64-conda-linux-gnu/bin/ld:
> warning: libmpicxx.so.12, needed by $PREFIX/lib/libsuperlu_dist.so, not
> found (try using -rpath or -rpath-link)
> <<<
>
> I don't really understand why this error comes up [as with shared
> libraries we should be able to link with -lsuperlu_dist - without having to
> link with libmpicxx.so.12
>
> What do you get for:
>
> ldd $PREFIX/lib/libstdc++.so
>
>
> BTW: is configure.log modified to replace realpaths with $PREFIX
> $BUILD_PREFIX etc?
>
> Can you try additional configure option LIBS=-lmpicxx and see if that
> works around this problem?
>
> Satish
>
> On Tue, 18 Jan 2022, Xiaoye S. Li wrote:
>
> > There was a merge error in the master branch. I fixed it today. Not sure
> > whether that's causing your problem.   Can you try now?
> >
> > Sherry
> >
> > On Mon, Jan 17, 2022 at 11:55 AM Fande Kong <fdkong.jd at gmail.com> wrote:
> >
> > > I am trying to port PETSc-3.16.3 to the MOOSE ecosystem. I got an error
> > > that PETSc could not build  superlu_dist.  The log file was attached.
> > >
> > > PETSc-3.15.x worked correctly in the same environment.
> > >
> > > Thanks,
> > > Fande
> > >
> >
>
>
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