[petsc-users] download zlib error
Mark Adams
mfadams at lbl.gov
Wed Jul 7 11:29:39 CDT 2021
Ok, I tried that but now I get this error.
On Wed, Jul 7, 2021 at 12:13 PM Stefano Zampini <stefano.zampini at gmail.com>
wrote:
> There's an extra comma
>
> Il Mer 7 Lug 2021, 18:08 Mark Adams <mfadams at lbl.gov> ha scritto:
>
>> Humm, I get this error (I just copied your whole file into here):
>>
>> 12:06 jczhang/fix-kokkos-includes=
>> /gpfs/alpine/csc314/scratch/adams/petsc$ ~/arch-spock-dbg-cray-kokkos.py
>> Traceback (most recent call last):
>> File "/ccs/home/adams/arch-spock-dbg-cray-kokkos.py", line 27, in
>> <module>
>> '--LDFLAGS=-L'+os.environ['ROCM_PATH'],+'lib -lhsa-runtime64',
>> TypeError: bad operand type for unary +: 'str'
>>
>> On Wed, Jul 7, 2021 at 11:08 AM Stefano Zampini <
>> stefano.zampini at gmail.com> wrote:
>>
>>> Mark
>>>
>>> On Spock, you can use
>>> https://gitlab.com/petsc/petsc/-/blob/main/config/examples/arch-olcf-spock.py as
>>> a template for your configuration. You need to add libraries as LDFLAGS to
>>> resolve the hsa symbols
>>>
>>> On Jul 7, 2021, at 5:04 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>>
>>> Thanks,
>>>
>>> 08:30 jczhang/fix-kokkos-includes=
>>> /gpfs/alpine/csc314/scratch/adams/petsc$ cd
>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11
>>> && CC="cc" CFLAGS="-fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I${ROCM_PATH}/include"
>>> prefix="/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos"
>>> ./configure && /usr/bin/gmake -j8 -l307.2 && /usr/bin/gmake install
>>> Checking for shared library support...
>>> Building shared library libz.so.1.2.11 with cc.
>>> Checking for size_t... Yes.
>>> Checking for off64_t... Yes.
>>> Checking for fseeko... Yes.
>>> Checking for strerror... No.
>>> Checking for unistd.h... Yes.
>>> Checking for stdarg.h... Yes.
>>> Checking whether to use vs[n]printf() or s[n]printf()... using
>>> vs[n]printf().
>>> Checking for vsnprintf() in stdio.h... No.
>>> WARNING: vsnprintf() not found, falling back to vsprintf(). zlib
>>> can build but will be open to possible buffer-overflow security
>>> vulnerabilities.
>>> Checking for return value of vsprintf()... Yes.
>>> Checking for attribute(visibility) support... Yes.
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -c -o example.o
>>> test/example.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o adler32.o adler32.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o crc32.o crc32.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o deflate.o deflate.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o infback.o infback.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inffast.o inffast.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inflate.o inflate.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inftrees.o inftrees.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o trees.o trees.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o zutil.o zutil.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o compress.o compress.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o uncompr.o uncompr.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzclose.o gzclose.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzlib.o gzlib.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzread.o gzread.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -c -o minigzip.o
>>> test/minigzip.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/adler32.o adler32.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/crc32.o crc32.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/deflate.o deflate.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/infback.o infback.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/inffast.o inffast.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/inflate.o inflate.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/inftrees.o inftrees.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/trees.o trees.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/zutil.o zutil.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/compress.o compress.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/uncompr.o uncompr.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/gzclose.o gzclose.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/gzlib.o gzlib.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/gzread.o gzread.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>>> -c -o objs/gzwrite.o gzwrite.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o
>>> example64.o test/example.c
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o
>>> minigzip64.o test/minigzip.c
>>> ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o
>>> inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o
>>> gzwrite.o
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o example example.o -L. libz.a
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a
>>> cc -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -fPIC
>>> -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o
>>> libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo
>>> inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo
>>> gzlib.lo gzread.lo gzwrite.lo -lc
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L.
>>> libz.a
>>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o example64 example64.o -L.
>>> libz.a
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_allocate
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_agent_iterate_memory_pools
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_signal_load_scacquire
>>> [--no-allow-shlib-undefined]
>>> ld.lldld.lld: : error: error:
>>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>>> hsa_amd_memory_pool_allocate
>>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
>>>
>>> ld.lldld.lld: : error: error:
>>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>>> hsa_amd_agent_iterate_memory_pools
>>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
>>>
>>> ld.lldld.lld: : error: error:
>>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>>> hsa_iterate_agents
>>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_get_info
>>> [--no-allow-shlib-undefined]
>>>
>>> ld.lldld.lld: : error: error:
>>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>>> hsa_signal_load_scacquire
>>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
>>>
>>> ld.lldld.lld: : error: error:
>>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>>> hsa_amd_memory_unlock
>>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
>>>
>>> ld.lldld.lld: : error: error:
>>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>>> hsa_signal_destroy
>>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_agents_allow_access
>>> [--no-allow-shlib-undefined]
>>>
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_get_info
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_agents_allow_access
>>> [--no-allow-shlib-undefined]
>>> clang-11: error: linker command failed with exit code 1 (use -v to see
>>> invocation)
>>> clang-11: error: linker command failed with exit code 1 (use -v to see
>>> invocation)
>>> gmake: *** [Makefile:292: minigzip] Error 1
>>> gmake: *** Waiting for unfinished jobs....
>>> gmake: *** [Makefile:289: example] Error 1
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_allocate
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_agent_iterate_memory_pools
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_signal_load_scacquire
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_get_info
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_agents_allow_access
>>> [--no-allow-shlib-undefined]
>>> clang-11: error: linker command failed with exit code 1 (use -v to see
>>> invocation)
>>> gmake: *** [Makefile:304: minigzip64] Error 1
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_allocate
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_agent_iterate_memory_pools
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_signal_load_scacquire
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_get_info
>>> [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
>>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>>> undefined reference to hsa_amd_agents_allow_access
>>> [--no-allow-shlib-undefined]
>>> clang-11: error: linker command failed with exit code 1 (use -v to see
>>> invocation)
>>> gmake: *** [Makefile:301: example64] Error 1
>>> rm -f libz.so libz.so.1
>>> ln -s libz.so.1.2.11 libz.so
>>> ln -s libz.so.1.2.11 libz.so.1
>>> 11:03 2 jczhang/fix-kokkos-includes=
>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11$
>>>
>>> On Wed, Jul 7, 2021 at 9:18 AM Matthew Knepley <knepley at gmail.com>
>>> wrote:
>>>
>>>> It is hard to see the error. I suspect it is something crazy with the
>>>> install. Can you run the build by hand?
>>>>
>>>> cd
>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11
>>>> && CC="cc" CFLAGS="-fPIC -fstack-protector -Qunused-arguments -g -O0
>>>> -I${ROCM_PATH}/include"
>>>> prefix="/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos"
>>>> ./configure && /usr/bin/gmake -j8 -l307.2 && /usr/bin/gmake install
>>>>
>>>> and see what happens, and what the error code is?
>>>>
>>>> Thanks,
>>>>
>>>> Matt
>>>>
>>>> On Wed, Jul 7, 2021 at 8:48 AM Mark Adams <mfadams at lbl.gov> wrote:
>>>>
>>>>> Also, this is in jczhang/fix-kokkos-includes
>>>>>
>>>>> On Wed, Jul 7, 2021 at 8:46 AM Mark Adams <mfadams at lbl.gov> wrote:
>>>>>
>>>>>> Apparently the same error with
>>>>>> --download-zlib=/yourselectedlocation/zlib-1.2.11.tar.gz
>>>>>>
>>>>>> On Tue, Jul 6, 2021 at 11:53 PM Barry Smith <bsmith at petsc.dev> wrote:
>>>>>>
>>>>>>> $ curl http://www.zlib.net/zlib-1.2.11.tar.gz > zlib-1.2.11.tar.gz
>>>>>>> % Total % Received % Xferd Average Speed Time Time
>>>>>>> Time Current
>>>>>>> Dload Upload Total Spent
>>>>>>> Left Speed
>>>>>>> 100 593k 100 593k 0 0 835k 0 --:--:-- --:--:--
>>>>>>> --:--:-- 834k
>>>>>>> ~/Src/petsc* (barry/2021-07-03/demonstrate-network-parallel-build=)*
>>>>>>> arch-demonstrate-network-parallel-build
>>>>>>> $ tar -zxf zlib-1.2.11.tar.gz
>>>>>>> ~/Src/petsc* (barry/2021-07-03/demonstrate-network-parallel-build=)*
>>>>>>> arch-demonstrate-network-parallel-build
>>>>>>> $ ls zlib-1.2.11
>>>>>>> CMakeLists.txt adler32.c deflate.c gzread.c
>>>>>>> inflate.h os400 watcom zlib.h
>>>>>>> ChangeLog amiga deflate.h gzwrite.c
>>>>>>> inftrees.c qnx win32 zlib.map
>>>>>>> FAQ compress.c doc infback.c
>>>>>>> inftrees.h test zconf.h zlib.pc.cmakein
>>>>>>> INDEX configure examples inffast.c
>>>>>>> make_vms.com treebuild.xml zconf.h.cmakein zlib.pc.in
>>>>>>> Makefile contrib gzclose.c inffast.h
>>>>>>> msdos trees.c zconf.h.in zlib2ansi
>>>>>>> Makefile.in crc32.c gzguts.h inffixed.h
>>>>>>> nintendods trees.h zlib.3 zutil.c
>>>>>>> README crc32.h gzlib.c inflate.c old
>>>>>>> uncompr.c zlib.3.pdf zutil.h
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Jul 6, 2021, at 7:57 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Tue, Jul 6, 2021 at 6:42 PM Barry Smith <bsmith at petsc.dev> wrote:
>>>>>>>
>>>>>>>>
>>>>>>>> Mark,
>>>>>>>>
>>>>>>>> You can try what the configure error message should be
>>>>>>>> suggesting (it is not clear if that is being printed to your screen or no).
>>>>>>>>
>>>>>>>> ERROR: Unable to download package ZLIB from:
>>>>>>>> http://www.zlib.net/zlib-1.2.11.tar.gz
>>>>>>>
>>>>>>>
>>>>>>> My browser can not open this and I could not see a download button
>>>>>>> on this site.
>>>>>>>
>>>>>>> Can you download this?
>>>>>>>
>>>>>>>
>>>>>>>>
>>>>>>>> * If URL specified manually - perhaps there is a typo?
>>>>>>>> * If your network is disconnected - please reconnect and rerun
>>>>>>>> ./configure
>>>>>>>> * Or perhaps you have a firewall blocking the download
>>>>>>>> * You can run with --with-packages-download-dir=/adirectory and
>>>>>>>> ./configure will instruct you what packages to download manually
>>>>>>>> * or you can download the above URL manually, to
>>>>>>>> /yourselectedlocation/zlib-1.2.11.tar.gz
>>>>>>>> and use the configure option:
>>>>>>>> --download-zlib=/yourselectedlocation/zlib-1.2.11.tar.gz
>>>>>>>>
>>>>>>>> Barry
>>>>>>>>
>>>>>>>>
>>>>>>>> > On Jul 6, 2021, at 4:29 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>>>>>>> >
>>>>>>>> > I am getting some sort of error in build zlib on Spock at ORNL.
>>>>>>>> > Other libraries are downloaded and I am sure the network is fine.
>>>>>>>> > Any ideas?
>>>>>>>> > Thanks,
>>>>>>>> > Mark
>>>>>>>> > <configure.log>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>
>>>> --
>>>> What most experimenters take for granted before they begin their
>>>> experiments is infinitely more interesting than any results to which their
>>>> experiments lead.
>>>> -- Norbert Wiener
>>>>
>>>> https://www.cse.buffalo.edu/~knepley/
>>>> <http://www.cse.buffalo.edu/~knepley/>
>>>>
>>>
>>>
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