[petsc-users] download zlib error
Stefano Zampini
stefano.zampini at gmail.com
Wed Jul 7 11:13:13 CDT 2021
There's an extra comma
Il Mer 7 Lug 2021, 18:08 Mark Adams <mfadams at lbl.gov> ha scritto:
> Humm, I get this error (I just copied your whole file into here):
>
> 12:06 jczhang/fix-kokkos-includes=
> /gpfs/alpine/csc314/scratch/adams/petsc$ ~/arch-spock-dbg-cray-kokkos.py
> Traceback (most recent call last):
> File "/ccs/home/adams/arch-spock-dbg-cray-kokkos.py", line 27, in
> <module>
> '--LDFLAGS=-L'+os.environ['ROCM_PATH'],+'lib -lhsa-runtime64',
> TypeError: bad operand type for unary +: 'str'
>
> On Wed, Jul 7, 2021 at 11:08 AM Stefano Zampini <stefano.zampini at gmail.com>
> wrote:
>
>> Mark
>>
>> On Spock, you can use
>> https://gitlab.com/petsc/petsc/-/blob/main/config/examples/arch-olcf-spock.py as
>> a template for your configuration. You need to add libraries as LDFLAGS to
>> resolve the hsa symbols
>>
>> On Jul 7, 2021, at 5:04 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>
>> Thanks,
>>
>> 08:30 jczhang/fix-kokkos-includes=
>> /gpfs/alpine/csc314/scratch/adams/petsc$ cd
>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11
>> && CC="cc" CFLAGS="-fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I${ROCM_PATH}/include"
>> prefix="/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos"
>> ./configure && /usr/bin/gmake -j8 -l307.2 && /usr/bin/gmake install
>> Checking for shared library support...
>> Building shared library libz.so.1.2.11 with cc.
>> Checking for size_t... Yes.
>> Checking for off64_t... Yes.
>> Checking for fseeko... Yes.
>> Checking for strerror... No.
>> Checking for unistd.h... Yes.
>> Checking for stdarg.h... Yes.
>> Checking whether to use vs[n]printf() or s[n]printf()... using
>> vs[n]printf().
>> Checking for vsnprintf() in stdio.h... No.
>> WARNING: vsnprintf() not found, falling back to vsprintf(). zlib
>> can build but will be open to possible buffer-overflow security
>> vulnerabilities.
>> Checking for return value of vsprintf()... Yes.
>> Checking for attribute(visibility) support... Yes.
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -c -o example.o
>> test/example.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o adler32.o adler32.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o crc32.o crc32.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o deflate.o deflate.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o infback.o infback.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inffast.o inffast.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inflate.o inflate.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o inftrees.o inftrees.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o trees.o trees.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o zutil.o zutil.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o compress.o compress.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o uncompr.o uncompr.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzclose.o gzclose.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzlib.o gzlib.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzread.o gzread.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -c -o minigzip.o
>> test/minigzip.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/adler32.o adler32.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/crc32.o crc32.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/deflate.o deflate.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/infback.o infback.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/inffast.o inffast.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/inflate.o inflate.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/inftrees.o inftrees.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/trees.o trees.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/zutil.o zutil.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/compress.o compress.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/uncompr.o uncompr.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/gzclose.o gzclose.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/gzlib.o gzlib.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/gzread.o gzread.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -DPIC
>> -c -o objs/gzwrite.o gzwrite.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o
>> example64.o test/example.c
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o
>> minigzip64.o test/minigzip.c
>> ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o
>> inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o
>> gzwrite.o
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o example example.o -L. libz.a
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a
>> cc -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -fPIC
>> -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -fPIC
>> -D_LARGEFILE64_SOURCE=1 -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o
>> libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo
>> inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo
>> gzlib.lo gzread.lo gzwrite.lo -lc
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L.
>> libz.a
>> cc -fPIC -fstack-protector -Qunused-arguments -g -O0
>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -D_LARGEFILE64_SOURCE=1
>> -DNO_STRERROR -DNO_vsnprintf -DHAVE_HIDDEN -o example64 example64.o -L.
>> libz.a
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_allocate
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_agent_iterate_memory_pools
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_signal_load_scacquire
>> [--no-allow-shlib-undefined]
>> ld.lldld.lld: : error: error:
>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>> hsa_amd_memory_pool_allocate
>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
>>
>> ld.lldld.lld: : error: error:
>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>> hsa_amd_agent_iterate_memory_pools
>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
>>
>> ld.lldld.lld: : error: error:
>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>> hsa_iterate_agents
>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_get_info
>> [--no-allow-shlib-undefined]
>>
>> ld.lldld.lld: : error: error:
>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>> hsa_signal_load_scacquire
>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
>>
>> ld.lldld.lld: : error: error:
>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>> hsa_amd_memory_unlock
>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
>>
>> ld.lldld.lld: : error: error:
>> /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so: undefined reference to
>> hsa_signal_destroy
>> [--no-allow-shlib-undefined]/opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_agents_allow_access
>> [--no-allow-shlib-undefined]
>>
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_get_info
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_agents_allow_access
>> [--no-allow-shlib-undefined]
>> clang-11: error: linker command failed with exit code 1 (use -v to see
>> invocation)
>> clang-11: error: linker command failed with exit code 1 (use -v to see
>> invocation)
>> gmake: *** [Makefile:292: minigzip] Error 1
>> gmake: *** Waiting for unfinished jobs....
>> gmake: *** [Makefile:289: example] Error 1
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_allocate
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_agent_iterate_memory_pools
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_signal_load_scacquire
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_get_info
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_agents_allow_access
>> [--no-allow-shlib-undefined]
>> clang-11: error: linker command failed with exit code 1 (use -v to see
>> invocation)
>> gmake: *** [Makefile:304: minigzip64] Error 1
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_allocate
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_agent_iterate_memory_pools
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_iterate_agents [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_signal_load_scacquire
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_unlock [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_signal_destroy [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_get_info
>> [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_lock [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_memory_pool_free [--no-allow-shlib-undefined]
>> ld.lld: error: /opt/cray/pe/mpich/8.1.4/gtl/lib/libmpi_gtl_hsa.so:
>> undefined reference to hsa_amd_agents_allow_access
>> [--no-allow-shlib-undefined]
>> clang-11: error: linker command failed with exit code 1 (use -v to see
>> invocation)
>> gmake: *** [Makefile:301: example64] Error 1
>> rm -f libz.so libz.so.1
>> ln -s libz.so.1.2.11 libz.so
>> ln -s libz.so.1.2.11 libz.so.1
>> 11:03 2 jczhang/fix-kokkos-includes=
>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11$
>>
>> On Wed, Jul 7, 2021 at 9:18 AM Matthew Knepley <knepley at gmail.com> wrote:
>>
>>> It is hard to see the error. I suspect it is something crazy with the
>>> install. Can you run the build by hand?
>>>
>>> cd
>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/externalpackages/zlib-1.2.11
>>> && CC="cc" CFLAGS="-fPIC -fstack-protector -Qunused-arguments -g -O0
>>> -I${ROCM_PATH}/include"
>>> prefix="/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos"
>>> ./configure && /usr/bin/gmake -j8 -l307.2 && /usr/bin/gmake install
>>>
>>> and see what happens, and what the error code is?
>>>
>>> Thanks,
>>>
>>> Matt
>>>
>>> On Wed, Jul 7, 2021 at 8:48 AM Mark Adams <mfadams at lbl.gov> wrote:
>>>
>>>> Also, this is in jczhang/fix-kokkos-includes
>>>>
>>>> On Wed, Jul 7, 2021 at 8:46 AM Mark Adams <mfadams at lbl.gov> wrote:
>>>>
>>>>> Apparently the same error with
>>>>> --download-zlib=/yourselectedlocation/zlib-1.2.11.tar.gz
>>>>>
>>>>> On Tue, Jul 6, 2021 at 11:53 PM Barry Smith <bsmith at petsc.dev> wrote:
>>>>>
>>>>>> $ curl http://www.zlib.net/zlib-1.2.11.tar.gz > zlib-1.2.11.tar.gz
>>>>>> % Total % Received % Xferd Average Speed Time Time
>>>>>> Time Current
>>>>>> Dload Upload Total Spent
>>>>>> Left Speed
>>>>>> 100 593k 100 593k 0 0 835k 0 --:--:-- --:--:--
>>>>>> --:--:-- 834k
>>>>>> ~/Src/petsc* (barry/2021-07-03/demonstrate-network-parallel-build=)*
>>>>>> arch-demonstrate-network-parallel-build
>>>>>> $ tar -zxf zlib-1.2.11.tar.gz
>>>>>> ~/Src/petsc* (barry/2021-07-03/demonstrate-network-parallel-build=)*
>>>>>> arch-demonstrate-network-parallel-build
>>>>>> $ ls zlib-1.2.11
>>>>>> CMakeLists.txt adler32.c deflate.c gzread.c
>>>>>> inflate.h os400 watcom zlib.h
>>>>>> ChangeLog amiga deflate.h gzwrite.c
>>>>>> inftrees.c qnx win32 zlib.map
>>>>>> FAQ compress.c doc infback.c
>>>>>> inftrees.h test zconf.h zlib.pc.cmakein
>>>>>> INDEX configure examples inffast.c
>>>>>> make_vms.com treebuild.xml zconf.h.cmakein zlib.pc.in
>>>>>> Makefile contrib gzclose.c inffast.h msdos
>>>>>> trees.c zconf.h.in zlib2ansi
>>>>>> Makefile.in crc32.c gzguts.h inffixed.h
>>>>>> nintendods trees.h zlib.3 zutil.c
>>>>>> README crc32.h gzlib.c inflate.c old
>>>>>> uncompr.c zlib.3.pdf zutil.h
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Jul 6, 2021, at 7:57 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Tue, Jul 6, 2021 at 6:42 PM Barry Smith <bsmith at petsc.dev> wrote:
>>>>>>
>>>>>>>
>>>>>>> Mark,
>>>>>>>
>>>>>>> You can try what the configure error message should be suggesting
>>>>>>> (it is not clear if that is being printed to your screen or no).
>>>>>>>
>>>>>>> ERROR: Unable to download package ZLIB from:
>>>>>>> http://www.zlib.net/zlib-1.2.11.tar.gz
>>>>>>
>>>>>>
>>>>>> My browser can not open this and I could not see a download button on
>>>>>> this site.
>>>>>>
>>>>>> Can you download this?
>>>>>>
>>>>>>
>>>>>>>
>>>>>>> * If URL specified manually - perhaps there is a typo?
>>>>>>> * If your network is disconnected - please reconnect and rerun
>>>>>>> ./configure
>>>>>>> * Or perhaps you have a firewall blocking the download
>>>>>>> * You can run with --with-packages-download-dir=/adirectory and
>>>>>>> ./configure will instruct you what packages to download manually
>>>>>>> * or you can download the above URL manually, to
>>>>>>> /yourselectedlocation/zlib-1.2.11.tar.gz
>>>>>>> and use the configure option:
>>>>>>> --download-zlib=/yourselectedlocation/zlib-1.2.11.tar.gz
>>>>>>>
>>>>>>> Barry
>>>>>>>
>>>>>>>
>>>>>>> > On Jul 6, 2021, at 4:29 PM, Mark Adams <mfadams at lbl.gov> wrote:
>>>>>>> >
>>>>>>> > I am getting some sort of error in build zlib on Spock at ORNL.
>>>>>>> > Other libraries are downloaded and I am sure the network is fine.
>>>>>>> > Any ideas?
>>>>>>> > Thanks,
>>>>>>> > Mark
>>>>>>> > <configure.log>
>>>>>>>
>>>>>>>
>>>>>>
>>>
>>> --
>>> What most experimenters take for granted before they begin their
>>> experiments is infinitely more interesting than any results to which their
>>> experiments lead.
>>> -- Norbert Wiener
>>>
>>> https://www.cse.buffalo.edu/~knepley/
>>> <http://www.cse.buffalo.edu/~knepley/>
>>>
>>
>>
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