[petsc-users] Compilation error of test program: "MatDenseGetArray" was not declared in this scope

[Roland Richter]

Hei,

I just encountered an issue which I can not solve on my own. I wrote a
test program on my development machine, and compilation works fine, but
when trying to compile it on the production machine compilation fails with

/[ 25%] Building CXX object
CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o//
///share/apps/software/OpenMPI/3.1.3-gcccuda-2019a/bin/mpicxx
-DBOOST_NO_AUTO_PTR -DUSE_CUDA -DUSE_PHYSICS_VARIABLES
-Dtest_program_EXPORTS
-I~/work_directory/full_physics/Test-Controller/library/include
-I~/work_directory/full_physics/physics_variables/include
-I~/local_opt_GCC7/interp2d/include -I/usr/include/eigen3
-I/share/apps/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include
-I/share/apps/software/MPI/intel/2018.3.222-GCC-7.3.0-2.30/impi/2018.3.222/imkl/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/include
-isystem ~/local_opt_GCC7/dealii/include -isystem
~/local_opt_GCC7/dealii/include/deal.II/bundled -isystem
/share/apps/software/Core/icc/2019.1.144-GCC-8.2.0-2.31.1/tbb/include
-isystem ~/local_opt_GCC7/boost/include -isystem
~/local_opt_GCC7/petsc/include -isystem
~/local_opt_GCC7/trilinos/include -isystem
~/local_opt_GCC7/arrayfire/include -isystem
/share/apps/software/imkl/2019.5.281-iimpi-2019b/mkl/include -isystem
~/local_opt_GCC7/suitesparse/include -isystem
/share/apps/software/MPI/GCC-CUDA/8.2.0-2.31.1-10.1.105/OpenMPI/3.1.3/HDF5/1.10.5/include
-isystem /share/apps/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include
-isystem /share/apps/software/Compiler/GCCcore/8.2.0/Szip/2.1.1/include
-isystem
/share/apps/software/Compiler/GCC/8.2.0-2.31.1/CUDA/10.1.105/include
-isystem
/share/apps/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/include
-isystem ~/local_opt_GCC7/adol-c/include -isystem
~/local_opt_GCC7/p4est/include -isystem ~/local_opt_GCC7/slepc/include
-isystem ~/local_opt_GCC7/armadillo/include -isystem
/share/apps/software/MPI/GCC-CUDA/8.2.0-2.31.1-10.1.105/OpenMPI/3.1.3/FFTW/3.3.8/include
-march=native -fopenmp-simd  -fPIC -flto -march=native -fopenmp -O2
-funroll-loops -funroll-all-loops -fstrict-aliasing -DMKL_LP64 -m64 -O3
-DNDEBUG -fPIC -pedantic -fPIC -Wall -Wextra -Wmissing-braces
-Woverloaded-virtual -Wpointer-arith -Wsign-compare -Wswitch -Wsynth
-Wwrite-strings -Wno-placement-new -Wno-literal-suffix -Wno-psabi
-Wno-class-memaccess -fopenmp-simd -march=native -mavx
-Wno-unused-local-typedefs -O2 -funroll-loops -funroll-all-loops
-fstrict-aliasing -Werror -flto -std=gnu++17 -MD -MT
CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o -MF
CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o.d -o
CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o -c
~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp//
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:
In member function 'void tester_helper::nonlinear_step(double&, double)'://
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:765:5:
error: 'MatDenseGetArrayWrite' was not declared in this scope//
//     MatDenseGetArrayWrite (petsc_field.pc_spectral, &write_ptr);//
//     ^~~~~~~~~~~~~~~~~~~~~//
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:765:5:
note: suggested alternative: 'MatDenseGetArrayRead'//
//     MatDenseGetArrayWrite (petsc_field.pc_spectral, &write_ptr);//
//     ^~~~~~~~~~~~~~~~~~~~~//
//     MatDenseGetArrayRead//
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:772:5:
error: 'MatDenseRestoreArrayWrite' was not declared in this scope//
//     MatDenseRestoreArrayWrite (petsc_field.pc_spectral, &write_ptr);//
//     ^~~~~~~~~~~~~~~~~~~~~~~~~//
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:772:5:
note: suggested alternative: 'MatDenseRestoreArrayRead'//
//     MatDenseRestoreArrayWrite (petsc_field.pc_spectral, &write_ptr);//
//     ^~~~~~~~~~~~~~~~~~~~~~~~~//
//     MatDenseRestoreArrayRead//
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:
In member function 'void
tester_helper::nonlinear_step_material_transition()'://
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:870:4:
error: 'MatDenseGetArrayWrite' was not declared in this scope//
//    MatDenseGetArrayWrite(split_mat, &write_mat_ptr);//
//    ^~~~~~~~~~~~~~~~~~~~~//
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:870:4:
note: suggested alternative: 'MatDenseGetArrayRead'//
//    MatDenseGetArrayWrite(split_mat, &write_mat_ptr);//
//    ^~~~~~~~~~~~~~~~~~~~~//
//    MatDenseGetArrayRead//
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:874:4:
error: 'MatDenseRestoreArrayWrite' was not declared in this scope//
//    MatDenseRestoreArrayWrite(split_mat, &write_mat_ptr);//
//    ^~~~~~~~~~~~~~~~~~~~~~~~~//
//~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:874:4:
note: suggested alternative: 'MatDenseRestoreArrayRead'//
//    MatDenseRestoreArrayWrite(split_mat, &write_mat_ptr);//
//    ^~~~~~~~~~~~~~~~~~~~~~~~~//
//    MatDenseRestoreArrayRead/

Where does that error come from, and how can I fix it/circumvent it? I
compile the program using gcc 8.2.0 (including mpi-wrappers) on the
production machine, and with gcc 9.3.1 on the dev machine.

Thanks,

regards,

Roland

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20210119/89ec84ad/attachment.html>